View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9717_low_3 (Length: 450)
Name: NF9717_low_3
Description: NF9717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9717_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 22 - 433
Target Start/End: Original strand, 32254075 - 32254486
Alignment:
| Q |
22 |
agtaatgttggattgaaattcaagtcttttgttgagatcattactgggaaatggcaagcggatcttttagttcgtaagtcaaaattctatgatacgtata |
121 |
Q |
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| T |
32254075 |
agtaatgttggattgaaattcaagtcttttgccgagatcattactgggaaatggcgagcggatcttttagttcgtaagtcaaaattctatgatacgtata |
32254174 |
T |
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| Q |
122 |
tagttcacaaatgttataaacattacttaatttcttcatatttttccacagatgttattggagttgtatctgatatgggctactgtcagcttaatgaaga |
221 |
Q |
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| T |
32254175 |
tagttcacaaatgttataaacattacttaatttcttcatatttttccacagatgttattggagttgtatctgatatgggctactgtcagtttaatgaaga |
32254274 |
T |
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| Q |
222 |
aaatgggaaaaagctgcaggttagcttcgctttgaaagatttatgatatggagacagaagtttatttgttgatttgaggtataaaatcaaatgttaagtc |
321 |
Q |
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| T |
32254275 |
aaatgggaaaaagttgcaggttagcttcgctttgaaagatttatgatatggagacagaagtttatttgctgatttgaggtataaaatcaaatgttaagtc |
32254374 |
T |
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| Q |
322 |
agtttgaacattaataaccaatgacatatctcttaactgcacactgtgggaggactatgctgcaaagtttatcaatttcaataatgataggaaggaaggc |
421 |
Q |
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| T |
32254375 |
tgtttgaacattaataaccagtgacatatctcttaactgcacactgtgggaggactatgctgcgaagtttatcaatttcaataatgataggaaggaaggc |
32254474 |
T |
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| Q |
422 |
gaacctatcatt |
433 |
Q |
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| T |
32254475 |
gaacctatcatt |
32254486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 158991 - 158951
Alignment:
| Q |
350 |
tctcttaactgcacactgtgggaggactatgctgcaaagtt |
390 |
Q |
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| T |
158991 |
tctcttaactgcactctttgggaggattatgctgcaaagtt |
158951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 390
Target Start/End: Complemental strand, 18078857 - 18078817
Alignment:
| Q |
350 |
tctcttaactgcacactgtgggaggactatgctgcaaagtt |
390 |
Q |
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| T |
18078857 |
tctcttaactgcactctttgggaggattatgctgcaaagtt |
18078817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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