View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9717_low_4 (Length: 418)
Name: NF9717_low_4
Description: NF9717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9717_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 56379126 - 56378736
Alignment:
| Q |
18 |
agaaacatcactcaactcaaaacaagtacgtaattaattaattaatatgcaaatgcaatattcctaaactaattaaattaccacaacaagtacagacgga |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56379126 |
agaaacatgactcaactcaaaacaagtacgtaattaattaat----atgcaaatgcaatattcctaaactaattaaattaccacaacaagtacagacgga |
56379031 |
T |
|
| Q |
118 |
tggatttataaatgcaagagaaagacttaaattaattaagaagttttatggagttgggagatgattagcactagcactagcagtagtatgttcatattga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
56379030 |
tggatttataaatgcaagagaaagacttaaattaattaagaagttttatggagttgggagatgattagcattagcactagcagtagtatgttcatgttga |
56378931 |
T |
|
| Q |
218 |
agttgttttttggcgagattgtgtttattgttatgcatccaaacttttagcactcttcttttcacaccaatctcttggcagaactgttgcaccacagatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56378930 |
agttgttttttggcgagattgtgtttattgttatgcatccaaacttttagcactcttcttttcacaccaatctcttggcagaactgttgcaccacagatt |
56378831 |
T |
|
| Q |
318 |
cctcttgcttttgaaatttccatccaactttctcagcaaagttcaacattttctccttctgttcctgtgtgaattttgtcctgaacctttgcttc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
56378830 |
cctcttgcttttgaaatttccatccaactttctcagcaaagttcaacattttctccttctgttcctgtgtgaattttgtcctgaaccttttcttc |
56378736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 332
Target Start/End: Original strand, 34370893 - 34370977
Alignment:
| Q |
248 |
ttatgcatccaaacttttagcactcttcttttcacaccaatctcttggcagaactgttgcaccacagattcctcttgcttttgaa |
332 |
Q |
| |
|
||||||||||| ||||| || | ||||||||| | ||||||||||| || |||| |||||||||||||||||| |||| |||| |
|
|
| T |
34370893 |
ttatgcatccacactttgaggattcttcttttgattccaatctcttgacaaaacttctgcaccacagattcctctagcttctgaa |
34370977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 335 - 402
Target Start/End: Original strand, 2494351 - 2494418
Alignment:
| Q |
335 |
ttccatccaactttctcagcaaagttcaacattttctccttctgttcctgtgtgaattttgtcctgaa |
402 |
Q |
| |
|
||||| ||||||||||||||||| |||| ||| || |||||||| || ||||| || ||||||||||| |
|
|
| T |
2494351 |
ttccacccaactttctcagcaaatttcagcatcttatccttctgatcttgtgtaaactttgtcctgaa |
2494418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 14021521 - 14021574
Alignment:
| Q |
346 |
tttctcagcaaagttcaacattttctccttctgttcctgtgtgaattttgtcct |
399 |
Q |
| |
|
||||||||| || | |||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
14021521 |
tttctcagctaactccaacatcttatccttctgttcctgcgtgaattttgtcct |
14021574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University