View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9717_low_5 (Length: 389)

Name: NF9717_low_5
Description: NF9717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9717_low_5
NF9717_low_5
[»] chr4 (15 HSPs)
chr4 (11-374)||(55636435-55636798)
chr4 (55-295)||(55664287-55664524)
chr4 (148-374)||(55619647-55619866)
chr4 (148-374)||(55657997-55658216)
chr4 (148-374)||(55626951-55627170)
chr4 (11-230)||(54628192-54628409)
chr4 (21-145)||(52984694-52984818)
chr4 (141-249)||(52983850-52983957)
chr4 (254-368)||(54629672-54629786)
chr4 (284-368)||(52983526-52983610)
chr4 (32-135)||(55627168-55627275)
chr4 (11-76)||(51316143-51316208)
chr4 (32-126)||(55619873-55619971)
chr4 (32-126)||(55658223-55658321)
chr4 (11-67)||(54861354-54861410)
[»] chr8 (2 HSPs)
chr8 (89-368)||(9890808-9891076)
chr8 (11-51)||(9890760-9890800)
[»] chr2 (1 HSPs)
chr2 (168-350)||(13402949-13403128)


Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 374
Target Start/End: Original strand, 55636435 - 55636798
Alignment:
Q  11 cagagagcaaatacaggcaatctaataaatcccatcttttttaaactcaaatgatgttgaatatcacatttaataaaatgcaatgttaatttctttattg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55636435 cagagagcaaatacaggcaatctaataaatcccatcttttttaaactcaaatgatgttgaatatcacatttaataaaatgcaatgttaatttctttattg 55636534  T
Q  111 cttatgttgttcttcatgtttgatgtttgcgtattacatgcatataaattgaagcttacatgttgtttaacatggagatgtggtgcaataataaccattg 210  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55636535 cttatgttgttcttcatgtttgatgtttgggcattacatgcatataaattgaagcttacatgttgtttaacatggagatgtggtgcaataataaccattg 55636634  T
Q  211 tagtcttgttggtgatatattcagttcacaggttacaccaatcagagtattagttgggttgttcggtgaccgtaaacccttattttccattttgttgtta 310  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55636635 tagtcttgttgatgatatattcagttcacaggttacaccaatcagagtattagttgggttgttcggtgaccgtaaacccttattttccattttgttgtta 55636734  T
Q  311 atacatcacctaagggaatgtattgtgatgcttgactattgaaattatgttttctgttctaggt 374  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  55636735 atacatcacctaagggaatgtattgtgatgcttgactattgacattatgttttctgttctaggt 55636798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 55 - 295
Target Start/End: Complemental strand, 55664524 - 55664287
Alignment:
Q  55 actcaaatgatgttgaatatcacatttaataaaatgcaatgttaatttctttattgcttatgttgttcttcatgtttgatgtttgcgtattacatgcata 154  Q
    |||||||||||||| |||||||  |||||| || ||||||||  |||||||||||||| ||| | ||||||| |||||||||||| |||| |||||||||    
T  55664524 actcaaatgatgttaaatatcatgtttaatgaagtgcaatgtcgatttctttattgctcatgcttttcttcaagtttgatgtttgggtatcacatgcata 55664425  T
Q  155 taaattgaagcttacatgttgtttaacatggagatgtggtgcaataataaccattgtagtcttgttggtgatatattcagttcacaggttacaccaatca 254  Q
    | |||  |||  |||| ||||||||||||||||||||||||  ||| | ||||||||||  |||||||||||||||| ||||| | ||||||||||||||    
T  55664424 ttaatcaaag-gtacacgttgtttaacatggagatgtggtg--atagttaccattgtagctttgttggtgatatatttagttctctggttacaccaatca 55664328  T
Q  255 gagtattagttgggttgttcggtgaccgtaaacccttattt 295  Q
     |||| |||||||  |||| ||||||   ||||||||||||    
T  55664327 aagtaatagttggactgttaggtgactagaaacccttattt 55664287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 148 - 374
Target Start/End: Complemental strand, 55619866 - 55619647
Alignment:
Q  148 atgcatataaattgaagcttacatgttgtttaacatggagatgtggtgcaataataaccattgtagtcttgttggtgatatattcagttcacaggtt--a 245  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||  || ||||||||||| ||||||||| ||||  ||||||  |    
T  55619866 atgcatataaattgaagct-acatgttgtttaacatggagatgtggtgcaatattaac--ttatagtcttgttgatgatatatttagttatcaggttaca 55619770  T
Q  246 caccaatcagagtattagttgggttgttcggtgaccgtaaacccttattttccattttgttgttaatacatcacctaagggaatgtattgtgatgcttga 345  Q
    |||||||||||||| ||||||| |     |||||  ||| ||| |||||||||||||||| || |||||||||   ||||| |||||||||| |||||||    
T  55619769 caccaatcagagtaatagttggat-----ggtga-tgtatacctttattttccattttgtagtaaatacatcattgaaggggatgtattgtggtgcttga 55619676  T
Q  346 ctattgaaattatgttttctgttctaggt 374  Q
    ||||||| ||||| ||||||||| |||||    
T  55619675 ctattgatattatattttctgttttaggt 55619647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 148 - 374
Target Start/End: Complemental strand, 55658216 - 55657997
Alignment:
Q  148 atgcatataaattgaagcttacatgttgtttaacatggagatgtggtgcaataataaccattgtagtcttgttggtgatatattcagttcacaggtt--a 245  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||  || ||||||||||| ||||||||| ||||  ||||||  |    
T  55658216 atgcatataaattgaagct-acatgttgtttaacatggagatgtggtgcaatattaac--ttatagtcttgttgatgatatatttagttatcaggttaca 55658120  T
Q  246 caccaatcagagtattagttgggttgttcggtgaccgtaaacccttattttccattttgttgttaatacatcacctaagggaatgtattgtgatgcttga 345  Q
    |||||||||||||| ||||||| |     |||||  ||| ||| |||||||||||||||| || |||||||||   ||||| |||||||||| |||||||    
T  55658119 caccaatcagagtaatagttggat-----ggtga-tgtatacctttattttccattttgtagtaaatacatcattgaaggggatgtattgtggtgcttga 55658026  T
Q  346 ctattgaaattatgttttctgttctaggt 374  Q
    ||||||| ||||| ||||||||| |||||    
T  55658025 ctattgatattatattttctgttttaggt 55657997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 148 - 374
Target Start/End: Complemental strand, 55627170 - 55626951
Alignment:
Q  148 atgcatataaattgaagcttacatgttgtttaacatggagatgtggtgcaataataaccattgtagtcttgttggtgatatattcagttcacaggtt--a 245  Q
    |||||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||||  || ||||||||||| ||||||||| ||||  ||||||  |    
T  55627170 atgcatataatttgaagct-acatgttttttaacatggagatgtggtgcaatattaac--ttatagtcttgttgatgatatatttagttatcaggttaca 55627074  T
Q  246 caccaatcagagtattagttgggttgttcggtgaccgtaaacccttattttccattttgttgttaatacatcacctaagggaatgtattgtgatgcttga 345  Q
    |||||||||||||| ||||||| |     |||||  ||| ||| |||||||||||||||| || |||||||||   ||||| |||||||||| |||||||    
T  55627073 caccaatcagagtaatagttggat-----ggtga-tgtatacctttattttccattttgtagtaaatacatcattgaaggggatgtattgtggtgcttga 55626980  T
Q  346 ctattgaaattatgttttctgttctaggt 374  Q
    ||||||| ||||| ||||||||| |||||    
T  55626979 ctattgatattatattttctgttttaggt 55626951  T

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Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 54628192 - 54628409
Alignment:
Q  11 cagagagcaaatacaggcaatctaataaatcccatcttttttaaactcaaatgatgttgaatatcacatttaataaaatgcaatgttaatttctttattg 110  Q
    ||||||||| ||||||| || || ||||||||||||||||| | |||||||||||| | ||| |||   |||||||| | |||||||||||||||||  |    
T  54628192 cagagagcagatacaggtaagcttataaatcccatctttttgatactcaaatgatgctaaatttcatgcttaataaagtacaatgttaatttcttta-ag 54628290  T
Q  111 cttatgttgttcttcatgtt---tgatgtttgcgtattacatgcatataaattgaagcttacatgttgtttaacatggagatgtggtgcaataataacca 207  Q
    || ||||| | ||||| |||   ||||||||| |||| |||| |||||||||||     |||||||| ||| | ||||||||||||||||||||||||||    
T  54628291 ctcatgttttgcttcaagtttgatgatgtttgggtatcacatacatataaattg----ctacatgttatttgagatggagatgtggtgcaataataacca 54628386  T
Q  208 ttgtagtcttgttggtgatatat 230  Q
    ||||| ||||| || ||||||||    
T  54628387 ttgtactcttgctgatgatatat 54628409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 52984818 - 52984694
Alignment:
Q  21 atacaggcaatctaataaatcccatcttttttaaactcaaatgatgttgaatatcacatttaataaaatgcaatgttaatttctttattgcttatgttgt 120  Q
    ||||||| || |||| ||||||||||||||| | |||||||||||||| |||||||  ||||||||| ||||||||||||||||||||||||||||   |    
T  52984818 atacaggtaagctaacaaatcccatctttttgatactcaaatgatgttaaatatcatgtttaataaagtgcaatgttaatttctttattgcttatgcgtt 52984719  T
Q  121 tcttcatgtttgatgtttgcgtatt 145  Q
    |||||  |||||||||||| |||||    
T  52984718 tcttctagtttgatgtttgggtatt 52984694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 141 - 249
Target Start/End: Complemental strand, 52983957 - 52983850
Alignment:
Q  141 gtattacatgcatataaattgaagcttacatgttgtttaacatggagatgtggtgcaataataaccattgtagtcttgttggtgatatattcagttcaca 240  Q
    |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||| ||||||||| |||||| ||| || |||||| ||||| ||    
T  52983957 gtatcacatgcatataaattgaagct-acatgttgtttaaaatggagatgtggtgctatagtaaccattgcagtcttcttgatggtatatttagttctca 52983859  T
Q  241 ggttacacc 249  Q
    |||||||||    
T  52983858 ggttacacc 52983850  T

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Target: chr4; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 254 - 368
Target Start/End: Original strand, 54629672 - 54629786
Alignment:
Q  254 agagtattagttgggttgttcggtgaccgtaaacccttattttccattttgttgttaatacatcacctaagggaatgtattgtgatgcttgactattgaa 353  Q
    ||||||||||||||  | || |||||  ||||||||||||||||||||||||||| ||||||||||  ||| ||||||||||| | ||||||||||||      
T  54629672 agagtattagttggaattttaggtgattgtaaacccttattttccattttgttgtaaatacatcactgaagagaatgtattgttacgcttgactattggc 54629771  T
Q  354 attatgttttctgtt 368  Q
    |||||||||||||||    
T  54629772 attatgttttctgtt 54629786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 368
Target Start/End: Complemental strand, 52983610 - 52983526
Alignment:
Q  284 aaacccttattttccattttgttgttaatacatcacctaagggaatgtattgtgatgcttgactattgaaattatgttttctgtt 368  Q
    ||||||||||||||||||||||| | || ||||||   |||||  |||||||  ||||||||||||||| |||||||||||||||    
T  52983610 aaacccttattttccattttgttttaaagacatcaatgaagggggtgtattgcaatgcttgactattgacattatgttttctgtt 52983526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 55627275 - 55627168
Alignment:
Q  32 ctaataaatcccatcttttttaaactcaaatgatgttgaat----atcacatttaataaaatgcaatgttaatttctttattgcttatgttgttcttcat 127  Q
    |||||||||||||||||||||| |||||||| |||||  ||    ||||  | ||||||  |||||||||| ||||| ||||||||||| | |||||||     
T  55627275 ctaataaatcccatcttttttatactcaaataatgttacatatcgatcatgtataataatgtgcaatgttagtttctgtattgcttatgcttttcttcaa 55627176  T
Q  128 gtttgatg 135  Q
    ||||||||    
T  55627175 gtttgatg 55627168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 51316143 - 51316208
Alignment:
Q  11 cagagagcaaatacaggcaatctaataaatcccatcttttttaaactcaaatgatgttgaatatca 76  Q
    ||||||||| ||||||| || | ||||| |||||||||||||| |||||||||| ||| |||||||    
T  51316143 cagagagcagatacaggtaaacaaataattcccatcttttttatactcaaatgacgttaaatatca 51316208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 55619971 - 55619873
Alignment:
Q  32 ctaataaatcccatcttttttaaactcaaatgatgttgaat----atcacatttaataaaatgcaatgttaatttctttattgcttatgttgttcttca 126  Q
    |||||||||||||||||||||| |||||||| |||||  ||    ||||  | ||||||  |||||||||| ||||| ||||||||||| | |||||||    
T  55619971 ctaataaatcccatcttttttatactcaaataatgttacatatcgatcatgtataataatgtgcaatgttagtttctgtattgcttatgcttttcttca 55619873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 55658321 - 55658223
Alignment:
Q  32 ctaataaatcccatcttttttaaactcaaatgatgttgaat----atcacatttaataaaatgcaatgttaatttctttattgcttatgttgttcttca 126  Q
    |||||||||||||||||||||| |||||||| |||||  ||    ||||  | ||||||  |||||||||| ||||| ||||||||||| | |||||||    
T  55658321 ctaataaatcccatcttttttatactcaaataatgttacatatcgatcatgtataataatgtgcaatgttagtttctgtattgcttatgcttttcttca 55658223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 54861410 - 54861354
Alignment:
Q  11 cagagagcaaatacaggcaatctaataaatcccatcttttttaaactcaaatgatgt 67  Q
    ||||||||| ||||||| || ||||||||||||||  |||| | |||||||||||||    
T  54861410 cagagagcagatacaggtaagctaataaatcccattattttgatactcaaatgatgt 54861354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 89 - 368
Target Start/End: Original strand, 9890808 - 9891076
Alignment:
Q  89 tgcaatgttaatttctttattgcttatgttgttcttcatgtttgatgtttgcgtattacatgcatataaattgaagcttacatgttgtttaacatggaga 188  Q
    |||||||||| ||||||||||||||||| | ||||||| ||||||||  || |||  |||||||||||||||||| || |||||||||||||||||||||    
T  9890808 tgcaatgttattttctttattgcttatgcttttcttcaagtttgatgcctgggtac-acatgcatataaattgaaact-acatgttgtttaacatggaga 9890905  T
Q  189 tgtggtgcaataataaccattgtagtcttgttggtgatatattcagttcacaggttacaccaatcagagtattagttgggttgttcggtgaccgtaaacc 288  Q
    ||| ||||||||||||| ||||||||||||||| ||||||||| ||||| | |||||||||||||| |||| ||||||| ||||| |||||             
T  9890906 tgttgtgcaataataactattgtagtcttgttgatgatatatttagttctctggttacaccaatcaaagtaatagttggattgttaggtga--------- 9890996  T
Q  289 cttattttccattttgttgttaatacatcacctaagggaatgtattgtgatgcttgactattgaaattatgttttctgtt 368  Q
    |||| ||||||||||| ||| ||||||||||| |||||  ||| || ||||| ||||||||| |  ||||||||||||||    
T  9890997 cttagtttccattttgctgtaaatacatcaccgaaggggttgtgttatgatgattgactatttactttatgttttctgtt 9891076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 9890760 - 9890800
Alignment:
Q  11 cagagagcaaatacaggcaatctaataaatcccatcttttt 51  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  9890760 cagagagcagatacaggtaatctaataaatcccatcttttt 9890800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 168 - 350
Target Start/End: Original strand, 13402949 - 13403128
Alignment:
Q  168 acatgttgtttaacatggagatgtggtgcaataataaccattgtagtcttgttggtgatatattcagttcacaggt--tacaccaatcagagtattagtt 265  Q
    ||||| |||||||||||||||| ||||||||||| | |||||||||||||||    |||||||| ||||| |||||  ||||||||| |||||| | |||    
T  13402949 acatgctgtttaacatggagatctggtgcaataacagccattgtagtcttgt---agatatatttagttcccaggttatacaccaattagagtaattgtt 13403045  T
Q  266 gggttgttcggtgaccgtaaacccttattttccattttgttgttaatacatcacctaagggaatgtattgtgatgcttgactatt 350  Q
    || ||||| ||||||  ||| ||||||||||||||  |||||| || |||| | | ||||||||  |||||  | ||||||||||    
T  13403046 ggtttgttaggtgac--taagcccttattttccatgctgttgtaaaaacattatcgaagggaattaattgtattacttgactatt 13403128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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