View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9717_low_6 (Length: 388)
Name: NF9717_low_6
Description: NF9717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9717_low_6 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 17753434 - 17753804
Alignment:
| Q |
18 |
gtaattgacagtaaagatggcgagatgcgtgccatggttcctatccctggtggttcagcagtgaagaacattgtattcagcaggaatggacagtatcttc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17753434 |
gtaattgacagtaaagatggcgagatgcgtgccatggttcctatctctggtggttcagcagtgaagaacattgtattcagcaggaatggacagtatcttc |
17753533 |
T |
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| Q |
118 |
taacaaactcaaatgatcgagtaatcagaatctatgaaaatctgcttccaccaaaagatgaagttagagcactagctgaactgaacgagaacgagaacct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17753534 |
taacaaactcaaatgatcgagtaatcagaatctatgaaaatctgcttccaccaaaagatgaagttagagcactagctgaactgaacgagaacgagaacat |
17753633 |
T |
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| Q |
218 |
cagtgatctaaatggtgttgagaagttgaaggctggaggatcaaaatgtttaactctgttccgtgagtttcaggatacaatcacgaaagtgcactggaag |
317 |
Q |
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| T |
17753634 |
cggtgatctaaatggtgttgagaagttgaaggctgtaggatcaaaatgtttaactctgttccgtgagtttcaagatacaatcacgaaagtgcactggaag |
17753733 |
T |
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| Q |
318 |
gcaccctgtttcagtggcgatggagagtggttagttggtggttctgctagcaaaggagagcacaagattta |
388 |
Q |
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| T |
17753734 |
gcaccctgtttcagtggcgatggagagtggttagttggtggttctgctagcaaaggagagcacaagattta |
17753804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 17762421 - 17762791
Alignment:
| Q |
18 |
gtaattgacagtaaagatggcgagatgcgtgccatggttcctatccctggtggttcagcagtgaagaacattgtattcagcaggaatggacagtatcttc |
117 |
Q |
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| T |
17762421 |
gtaattgacagtaaagatggcgagatgcgtgccatggttcctatctctggtggttcagcagtgaagaacattgtattcagcaggaatggacagtatcttc |
17762520 |
T |
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| Q |
118 |
taacaaactcaaatgatcgagtaatcagaatctatgaaaatctgcttccaccaaaagatgaagttagagcactagctgaactgaacgagaacgagaacct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17762521 |
taacaaactcaaatgatcgagtaatcagaatctatgaaaatctgcttccaccaaaagatgaagttagagcactagctgaactgaacgagaacgagaacat |
17762620 |
T |
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| Q |
218 |
cagtgatctaaatggtgttgagaagttgaaggctggaggatcaaaatgtttaactctgttccgtgagtttcaggatacaatcacgaaagtgcactggaag |
317 |
Q |
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| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17762621 |
cggtgatctaaatggtgttgagaagttgaaggctgtaggatcaaaatgtttaactctgttccgtgagtttcaagatacaatcacgaaagtgcactggaag |
17762720 |
T |
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| Q |
318 |
gcaccctgtttcagtggcgatggagagtggttagttggtggttctgctagcaaaggagagcacaagattta |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17762721 |
gcaccctgtttcagtggcgatggagagtggttagttggtggttctgctagcaaaggagagcacaagattta |
17762791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 17739286 - 17739650
Alignment:
| Q |
18 |
gtaattgacagtaaagatggcgagatgcgtgccatggttcctatccctggtggttcagcagtgaagaacattgtattcagcaggaatggacagtatcttc |
117 |
Q |
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|||||||||||||||||||||||| | | |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17739286 |
gtaattgacagtaaagatggcgaggtacatgccatggttcctatctctggtggttcagtagtgaagaacattgtattcagcaggaatggacagtatcttc |
17739385 |
T |
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| Q |
118 |
taacaaactcaaatgatcgagtaatcagaatctatgaaaatctgcttccaccaaaagatgaagttagagcactagctgaactgaacgagaacgagaacct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17739386 |
taacaaactcaaatgatcgagtaatcagaatctatgaaaatctgcttccgccaaaagatgaagttagagcactagctgaact------gaacgagaacct |
17739479 |
T |
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| Q |
218 |
cagtgatctaaatggtgttgagaagttgaaggctggaggatcaaaatgtttaactctgttccgtgagtttcaggatacaatcacgaaagtgcactggaag |
317 |
Q |
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| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||| |||||||||||| |
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| T |
17739480 |
cggtgatctaaatggtgtagagaagttgaaggctgcaggatcaaaatgtttaactttgttccgtgagtttcaagatgcaatcacgaaggtgcactggaag |
17739579 |
T |
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| Q |
318 |
gcaccctgtttcagtggcgatggagagtggttagttggtggttctgctagcaaaggagagcacaagattta |
388 |
Q |
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||||||||||||||||| ||||| |||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
17739580 |
gcaccctgtttcagtggtgatggtgagtgggttgttggtggttctgctagcaaaggagagcacaagattta |
17739650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 15735391 - 15735755
Alignment:
| Q |
18 |
gtaattgacagtaaagatggcgagatgcgtgccatggttcctatccctggtggttcagcagtgaagaacattgtattcagcaggaatggacagtatcttc |
117 |
Q |
| |
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|||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15735391 |
gtaattgacaataaagatggcgaggtgcgtgccatggttcctatctctggtggttcagtagtgaagaacattgtattcagcaggaatggacagtatcttc |
15735490 |
T |
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| Q |
118 |
taacaaactcaaatgatcgagtaatcagaatctatgaaaatctgcttccaccaaaagatgaagttagagcactagctgaactgaacgagaacgagaacct |
217 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
15735491 |
taacaaactcaaatgatagagtaatcaggatctatgaaaatcttcttccgccaaaagatgaagttagagcactagccgaact------taacgagaacct |
15735584 |
T |
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| Q |
218 |
cagtgatctaaatggtgttgagaagttgaaggctggaggatcaaaatgtttaactctgttccgtgagtttcaggatacaatcacgaaagtgcactggaag |
317 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||| |||||||||||| |
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| T |
15735585 |
cagtgatctaaacggtgttgagaagttgaaggctgcaggatcaaaatgtttaactttgttccgtgagtttcaagatgcaatcacgaaggtgcactggaag |
15735684 |
T |
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| Q |
318 |
gcaccctgtttcagtggcgatggagagtggttagttggtggttctgctagcaaaggagagcacaagattta |
388 |
Q |
| |
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||||||||||||||||| ||||| |||||| | ||||||||||||||||| |||||||||||||||||||| |
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| T |
15735685 |
gcaccctgtttcagtggtgatggtgagtgggttgttggtggttctgctagtaaaggagagcacaagattta |
15735755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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