View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9717_low_9 (Length: 308)
Name: NF9717_low_9
Description: NF9717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9717_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 11869018 - 11868783
Alignment:
| Q |
1 |
tttgcagtatgcaagcaattggcttctaaagggatcactgtggtgcttactgcaagagatgaaaagagaggtcttgaagctgttgagaagctgaaacagc |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11869018 |
tttgcagtatgcaatcaattggcttctaaagggatcactgtggtgcttactgcaagagatgaaaagagaggtcttgaagctgttgagaagctgaaacatc |
11868919 |
T |
|
| Q |
101 |
tttctttgcctggtcttgttgtttttcatcaacttgatgtcatagatcatgcaagtataagatcatttgtagattttatcaagaatcaatttggaaaact |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11868918 |
tttctctgcctggtcttgttgtttttcatcaacttgatgtcatagatgctgcgagtataagatcatttgtagattttatcaagaatcaatttggaaaact |
11868819 |
T |
|
| Q |
201 |
agatatcttggtaagttcaaatttatcttttctttt |
236 |
Q |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
11868818 |
agatatcttggtaagttcaaatttatctttgctttt |
11868783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 11875482 - 11875223
Alignment:
| Q |
1 |
tttgcagtatgcaagcaattggcttctaaagggatcactgtggtgcttactgcaagagatgaaaagagaggtcttgaagctgttgagaagctgaaacagc |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11875482 |
tttgcagtatgcaatcaattggcttctaaagggatcactgtggtgcttactgcaagagatgaaaagagaggtcttgaagctgttgagaaattgaaacagc |
11875383 |
T |
|
| Q |
101 |
tttctttgcctggtcttgttgtttttcatcaacttgatgtcatagatcatgcaagtataagatcatttgtagattttatcaagaatcaatttggaaaact |
200 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11875382 |
tttctttgcctggtcttgttgttttccaacaacttgatgtcatagatcatgcaagtataagatcatttgtagattttatcaagaatcaatttggtaaact |
11875283 |
T |
|
| Q |
201 |
agatatcttggt----aagttcaaatttatcttttctttttccattttcatgtttcttat |
256 |
Q |
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|||||||||||| ||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
11875282 |
agatatcttggtaagaaagttcaaatttatcttgtcttttgtcattttcatgtttcttat |
11875223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 11879091 - 11878877
Alignment:
| Q |
1 |
tttgcagtatgcaagcaattggcttctaaagggatcactgtggtgcttactgcaagagatgaaaagagaggtcttgaagctgttgagaagctgaaacagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11879091 |
tttgcagtatgcaagcaattggcttctaaagggatcactgtggtgcttactgcaagagatgaaaagagaggtcttgaagctgttgagaaattgaaacagc |
11878992 |
T |
|
| Q |
101 |
tttctttgcctggtcttgttgtttttcatcaacttgatgtcatagatcatgcaagtataagatcatttgtagattttatcaagaatcaatttggaaaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
11878991 |
tttctttgcctggtcttgttgtttttcatcaacttgatgtcatagatcatgcaagtataagatcatttgtagattttatcaagaatcaatttggtaatct |
11878892 |
T |
|
| Q |
201 |
agatatcttggtaag |
215 |
Q |
| |
|
|||| | |||||||| |
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|
| T |
11878891 |
agatcttttggtaag |
11878877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 11894098 - 11893884
Alignment:
| Q |
1 |
tttgcagtatgcaagcaattggcttctaaagggatcactgtggtgcttactgcaagagatgaaaagagaggtcttgaagctgttgagaagctgaaacagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11894098 |
tttgcagtatgcaagcaattggcttctaaagggatcactgtggtgcttactgcaagagatgaaaagagaggtcttgaagctgttgagaaattgaaacagc |
11893999 |
T |
|
| Q |
101 |
tttctttgcctggtcttgttgtttttcatcaacttgatgtcatagatcatgcaagtataagatcatttgtagattttatcaagaatcaatttggaaaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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|
| T |
11893998 |
tttctttgcctggtcttgttgtttttcatcaacttgatgtcatagatcatgcaagtataagatcatttgtagattttatcaagaatcaatttggtaatct |
11893899 |
T |
|
| Q |
201 |
agatatcttggtaag |
215 |
Q |
| |
|
|||| | |||||||| |
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|
| T |
11893898 |
agatcttttggtaag |
11893884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 11896507 - 11896293
Alignment:
| Q |
1 |
tttgcagtatgcaagcaattggcttctaaagggatcactgtggtgcttactgcaagagatgaaaagagaggtcttgaagctgttgagaagctgaaacagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11896507 |
tttgcagtatgcaagcaattggcttctaaagggatcactgtggtgcttactgcaagagatgaaaagagaggtcttgaagctgttgagaaattgaaacagc |
11896408 |
T |
|
| Q |
101 |
tttctttgcctggtcttgttgtttttcatcaacttgatgtcatagatcatgcaagtataagatcatttgtagattttatcaagaatcaatttggaaaact |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
11896407 |
tttctttgcctggtcttgttgtttttcatcaacttgatgtcatagatcatgcaagtataagatcatttgtagattttatcaagaatcaatttggtaatct |
11896308 |
T |
|
| Q |
201 |
agatatcttggtaag |
215 |
Q |
| |
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|||| | |||||||| |
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| T |
11896307 |
agatcttttggtaag |
11896293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 25858974 - 25859186
Alignment:
| Q |
1 |
tttgcagtatgcaagcaattggcttctaaagggatcactgtggtgcttactgcaagagatgaaaagagaggtcttgaagctgttgagaagctgaaacagc |
100 |
Q |
| |
|
|||||| ||||||||||||||| |||||| || |||| |||||||| | ||||||||||| ||||||||||||||||||||||| || |||| | | |
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| T |
25858974 |
tttgcaatatgcaagcaattggtttctaatggtatcaaagtggtgctggcagcaagagatgagaagagaggtcttgaagctgttgataaattgaaggatc |
25859073 |
T |
|
| Q |
101 |
tttctttgcctggtcttgttgtttttcatcaacttgatgtcatagatcatgcaagtataagatcatttgtagattttatcaagaatcaatttggaaaact |
200 |
Q |
| |
|
|| | | ||||| | ||| ||||| |||||||||||||||||||||| | ||||||| |||| |||| |||||| |||| ||||||||||| ||||| |
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| T |
25859074 |
ttgcacttcctggccatgtggttttccatcaacttgatgtcatagatcctacaagtattggatcttttgcagatttcctcaaaaatcaatttggtaaact |
25859173 |
T |
|
| Q |
201 |
agatatcttggta |
213 |
Q |
| |
|
|||||||||||| |
|
|
| T |
25859174 |
tgatatcttggta |
25859186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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