View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9718_high_1 (Length: 541)
Name: NF9718_high_1
Description: NF9718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9718_high_1 |
 | |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 1748453 - 1748977
Alignment:
| Q |
1 |
aaaacaataatttaatttgtcaaactcttaagattacagtcaatttgcnnnnnnn-tgctcattcatattggtctaacattggtatttgatcttttccaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1748453 |
aaaacaataatttaatttgtcaaactcttaagattacagtcaatttgcaaaaaaaatgctcattcatattggtcaaacattggtatttgatcttttccaa |
1748552 |
T |
|
| Q |
100 |
ccatgaaattgaattaggcccttagatcttcatggtttgcgacaatgcaaatgacttagccaccactaatttgattaacaacaacaactaaagctagtgt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1748553 |
ccatgaaattgaattaggcccttagatcttcatggtttgcgacaatgcaaatgacttagccaccactaatttgattaacaacaacaactaaagctagtgt |
1748652 |
T |
|
| Q |
200 |
ggtagagcctgctgaagtagcacatgccataaccannnnnnnnnnnnn-gcctacaccagctagtgctaatataaactcggctacatttggctctttcat |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1748653 |
ggtagagcctgctgaagtagcacatgccataaccattttttttttttttgcttacaccagctagtgctaatataaactcggctacatttggctctttcat |
1748752 |
T |
|
| Q |
299 |
ccgtttaccatgaagaaaatgacccaaaatctgattgaaaaaacttt-atgttatgactcccatttagagcagcagtagcaaaccaacaacaatagcagt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1748753 |
ccgtttaccatgaagaaaatgacccaaaatctgattgaaaaaacttttatgttatgactcccatttagagcagcagtagcaaaccaacaacaatagcagt |
1748852 |
T |
|
| Q |
398 |
aataacaacttatggttcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagggaaaaagcaaagcaagaacgaca |
497 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1748853 |
aataacaacttatggttcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagggaaaaagcaaagcaagaacgaca |
1748952 |
T |
|
| Q |
498 |
caacatcgctatttcaaattataat |
522 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
1748953 |
caacatcgctatttcaaattataat |
1748977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 102 - 454
Target Start/End: Complemental strand, 20686739 - 20686385
Alignment:
| Q |
102 |
atgaaattgaattaggcccttagatcttcatggtttgcgacaatgcaaatgacttagccaccactaatttgattaacaacaacaactaaagctagtgtgg |
201 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
20686739 |
atgaaactgaattaggcccttagatcttcatggtttgcgacaatgcaaatgacttagccaccaccaatttgattaacaacgacaactaaagctagtgtgg |
20686640 |
T |
|
| Q |
202 |
tagagcctgctgaagtagcacatgccataaccannnnnnnnnnnnn--gcctacaccagctagtgctaatataaactcggctacatttggctctttcatc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| ||| |
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|
| T |
20686639 |
tagagcctgctgaagtagcacatgccataaccatctgtttttttttttgcttacaccagctagggctaatataaactcggctacatttggctctttgatc |
20686540 |
T |
|
| Q |
300 |
cgtttaccatgaagaaaatgacccaaaatctgattgaaaaaactttatgttatgactcccatttagagcagcagtagcaaaccaacaacaatagcagtaa |
399 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| | | ||||| ||||||| |
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|
| T |
20686539 |
cttttaccatgaagaaaatgacccaaaatctgattgaaaaaactttacgttatgactcccatttagagaagcagtaacaaagaagcgacaatggcagtaa |
20686440 |
T |
|
| Q |
400 |
taacaacttatggttcctttatgatttgatgtaggtttcctagcaaatttggaaa |
454 |
Q |
| |
|
|||||||||||| ||||||| ||||||| | ||||||||| ||||||||||||| |
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|
| T |
20686439 |
caacaacttatggctcctttacgatttgacgcaggtttcctggcaaatttggaaa |
20686385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 387 - 522
Target Start/End: Complemental strand, 20686368 - 20686233
Alignment:
| Q |
387 |
acaatagcagtaataacaacttatggttcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagggaaaaagcaaag |
486 |
Q |
| |
|
||||| ||||||| |||||||||||| ||||||||||||||| | ||||||||| |||||||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
20686368 |
acaatggcagtaacaacaacttatggctcctttatgatttgacgcaggtttcctggcaaatttggaaaaaatcatgatatagaatattgaaaaagcaaag |
20686269 |
T |
|
| Q |
487 |
caagaacgacacaacatcgctatttcaaattataat |
522 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||| |
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|
| T |
20686268 |
caggaacgacacaacatcaatatttcaaattataat |
20686233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 20686819 - 20686772
Alignment:
| Q |
1 |
aaaacaataatttaatttgtcaaactcttaagattacagtcaatttgc |
48 |
Q |
| |
|
||||||||||||||||| || | |||||||||||| |||||||||||| |
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|
| T |
20686819 |
aaaacaataatttaattcgttagactcttaagattgcagtcaatttgc |
20686772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 42383362 - 42383884
Alignment:
| Q |
1 |
aaaacaataatttaatttgtcaaactcttaagattacagtcaatttgcnnnnnnn-tgctcattcatattggtctaacattggtatttgatcttttccaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
42383362 |
aaaacaataatttaatttgtcaaactcttaagattacagtcaatttgcaaaaaaaatgctcattcatattggtctaacattggtatttgttcttttccaa |
42383461 |
T |
|
| Q |
100 |
ccatgaaattgaattaggcccttagatcttcatggtttgcgacaatgcaaatgacttagccaccactaatttgattaacaacaacaactaaagctagtgt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
42383462 |
ccatgaaattgaattaggcccttagatcttcatggtttacgacaatgcaaatgacttagccaccactaatttgattaacagcaacaactaaagctagtgt |
42383561 |
T |
|
| Q |
200 |
ggtagagcctgctgaagtagcacatgccataaccannnnnnnnnnnnngcctacaccagctagtgctaatataaactcggctacatttggctctttcatc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42383562 |
ggtagagcctgctgaagtagcacatgccataaccatttttttttttt-gcttacaccagctagtgctaatataaactcggctacatttggctctttcatc |
42383660 |
T |
|
| Q |
300 |
cgtttaccatgaagaaaatgacccaaaatctgattgaaaaaacttt-atgttatgactcccatttagagcagcagtagcaaaccaacaacaatagcagta |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42383661 |
cgtttaccatgaagaaaatgacccaaaatctgattgaaaaaacttttatgttatgactcccatttagagcagcagtagcaaaccaacaacaatagcagta |
42383760 |
T |
|
| Q |
399 |
ataacaacttatggttcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagggaaaaagcaaagcaagaacgacac |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42383761 |
ataacaacttatggttcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagggaaaaagcaaagcaagaacgacac |
42383860 |
T |
|
| Q |
499 |
aacatcgctatttcaaattataat |
522 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
42383861 |
aacatcgctatttcaaattataat |
42383884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 414 - 474
Target Start/End: Original strand, 84872 - 84932
Alignment:
| Q |
414 |
tcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagg |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
84872 |
tcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagg |
84932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 160 - 317
Target Start/End: Original strand, 21988926 - 21989083
Alignment:
| Q |
160 |
caccactaatttgattaacaacaacaactaaagctagtgtggtagagcctgctgaagtagcacatgccataaccannnnnnnnnnnnngcctacaccagc |
259 |
Q |
| |
|
|||||| | |||||||||||||| ||||||||| |||||| |||| | | |||||||||||| |||||||||||| | | ||||||| |
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|
| T |
21988926 |
caccaccagtttgattaacaacagcaactaaagttagtgtcgtagtgtccgctgaagtagcatatgccataaccatcagtttttcttagtttccaccagc |
21989025 |
T |
|
| Q |
260 |
tagtgctaatataaactcggctacatttggctctttcatccgtttaccatgaagaaaa |
317 |
Q |
| |
|
||||||| ||||||||| |||||||||| |||||| |||| | ||||||||||||| |
|
|
| T |
21989026 |
tagtgctgatataaacttagctacatttgactctttgatccttccaccatgaagaaaa |
21989083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 8944167 - 8944222
Alignment:
| Q |
147 |
caaatgacttagcca---ccactaatttgattaacaacaacaactaaagctagtgt |
199 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| |||| ||||||||||| |
|
|
| T |
8944167 |
caaatgacttagccatcaccaccaatttgattaacaacagcaacaaaagctagtgt |
8944222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 26887492 - 26887437
Alignment:
| Q |
147 |
caaatgacttagcca---ccactaatttgattaacaacaacaactaaagctagtgt |
199 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||| |||| ||||||||||| |
|
|
| T |
26887492 |
caaatgacttagccatcaccaccaatttgattaacaacagcaacaaaagctagtgt |
26887437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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