View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9718_high_14 (Length: 247)
Name: NF9718_high_14
Description: NF9718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9718_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 223485 - 223711
Alignment:
| Q |
1 |
tatttgagacataaacatatataggcagaaaaacaattcaaaa-gaaagagacaaaaataaacatactatttgagtgtcatgaatgggtgagggaaggat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
223485 |
tatttgagacataaacatatataggcagaaaaacaagtcaaaaagaaagagataaaaataaacatactatttgagtgtcatgaatgggtgagggaaggat |
223584 |
T |
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| Q |
100 |
ggctttcataaaatgtttagaatctttctccggcgccggtggccggacagagcttctccggcgagcctgcattgtttgttcacttgtgcaaataataata |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
223585 |
ggctttcataaaatgtttagaatctttctccggcgccggtggccggacagagcttctccggcgagcctgcattgtttgttcacttgtgca---aataata |
223681 |
T |
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| Q |
200 |
ataaagtgaaatgagtttcaaaggttactt |
229 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
223682 |
ataaagtgaaatgagtttcaaaggttactt |
223711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 218278 - 218448
Alignment:
| Q |
1 |
tatttgagacataaacatatataggcagaaaaacaattcaaaagaaagagacaaaaataaacatactatttgagtgtcatgaatgggtgagggaaggatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |
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| T |
218278 |
tatttgagacataaacatatataggcagaaaaacaactcaaaagaaagagacaaaaataaacatactaatttagtgtcatgaatggctgagggaaggatg |
218377 |
T |
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| Q |
101 |
gctttcataaaatgtttagaatctttctccggcgccggtggccggacagagcttctccggcgagcctgcat |
171 |
Q |
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| T |
218378 |
gctttcataaaatgtttagaatccttctccgccaccggtggccggacagagcttctccggcgagcctgcat |
218448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 199215 - 199291
Alignment:
| Q |
98 |
atggctttcataaaatgtttagaatctttctccggcgccggtggccggacagagcttctccggcgagcctgcattgt |
174 |
Q |
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| T |
199215 |
atggctttcataaaatgcttcgatgctttctccggcgccggtgaccggccacatcttctccggtgaggctgcattgt |
199291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 225259 - 225301
Alignment:
| Q |
75 |
tgtcatgaatgggtgagggaaggatggctttcataaaatgttt |
117 |
Q |
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| T |
225259 |
tgtcatgaatgggtgagggaagtatggccttcttaaaatgttt |
225301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 212309 - 212354
Alignment:
| Q |
92 |
ggaaggatggctttcataaaatgtttagaatctttctccggcgccg |
137 |
Q |
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||||| ||||||||||||||||| || ||||||||||||| ||||| |
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| T |
212309 |
ggaagtatggctttcataaaatgctttgaatctttctccgccgccg |
212354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 173
Target Start/End: Original strand, 3809295 - 3809431
Alignment:
| Q |
38 |
tcaaaagaaagagacaaaaataaacatactatttgagtgtcatgaatgggtgagggaaggatggctttcataaaatgtttagaat-ctttctccggcgcc |
136 |
Q |
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|||||||||||||| ||| |||| ||||| ||||||| |||||||||||||||||| |||||||||| ||||||||| || | | |||||||||||| |
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| T |
3809295 |
tcaaaagaaagagagaaaccgaaacttactaattgagtggcatgaatgggtgagggaattatggctttcagaaaatgttttgattaccttctccggcgcc |
3809394 |
T |
|
| Q |
137 |
ggtggccggacagagcttctccggcgagcctgcattg |
173 |
Q |
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|| | ||||||| ||||||||||||| |||||||| |
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| T |
3809395 |
aatgactggacagaccttctccggcgaggctgcattg |
3809431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 29839309 - 29839364
Alignment:
| Q |
79 |
atgaatgggtgagggaaggatggctttcataaaatgtttagaatctttctccggcg |
134 |
Q |
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|
|||||||||||||||||| |||||||||||||||||||| || || |||||||||| |
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|
| T |
29839309 |
atgaatgggtgagggaagtatggctttcataaaatgttttgattccttctccggcg |
29839364 |
T |
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