View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9718_high_2 (Length: 502)

Name: NF9718_high_2
Description: NF9718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9718_high_2
NF9718_high_2
[»] scaffold0007 (1 HSPs)
scaffold0007 (19-243)||(22576-22800)
[»] chr6 (2 HSPs)
chr6 (240-455)||(29700031-29700246)
chr6 (240-455)||(29738315-29738530)


Alignment Details
Target: scaffold0007 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 22576 - 22800
Alignment:
Q  19 agacgaagtaatgttaaatgtactggcaacatttatccatcttatcaagaatagcaatcatcgatggacaatttcatagtctctttttggctatgaatat 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22576 agacgaagtaatgttaaatgtactggcaacatttgtccatcttatcaagaatagcaatcatcgatggacaatttcatagtctccttttggctatgaatat 22675  T
Q  119 gggtaataaataataagggaggtattttggttgagttcaatgtaatattcggtgctcttgataaggccaaattgaaaggttggactaaagtgtgagttga 218  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22676 gggtaataaataataagggaggtattttggctgagttcaatgcaatattcggtgctcttgataaggccaagttgaaaggttggactaaagtgtgagttga 22775  T
Q  219 atcatattttaagtgtttgtgaact 243  Q
    |||||||||||||||||||||||||    
T  22776 atcatattttaagtgtttgtgaact 22800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 240 - 455
Target Start/End: Complemental strand, 29700246 - 29700031
Alignment:
Q  240 aactaaaaagaccttctattgattgtaagatataaacttgattaaaactactgattggtaaaatattagaacagttactcagtagaacattaaaataatt 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||    
T  29700246 aactaaaaagaccttctattgattgtaagatataaacttgattaaaactactgcttggtggaatattagaacagttactcagtagaacattaaaataatt 29700147  T
Q  340 ggcttgaaccatagttcaacttccacgactaaacaattcatgcacaagccttcctaacaagattattatgtttacagcatttagtcttgtcatattttta 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29700146 ggcttgaaccatagttcaacttccacgactaaacaattcatgcacaagccttcctaacaagattattatgtttacagaatttagtcttgtcatattttta 29700047  T
Q  440 ttaaaaacatgaatgc 455  Q
    ||||||||||||||||    
T  29700046 ttaaaaacatgaatgc 29700031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 240 - 455
Target Start/End: Complemental strand, 29738530 - 29738315
Alignment:
Q  240 aactaaaaagaccttctattgattgtaagatataaacttgattaaaactactgattggtaaaatattagaacagttactcagtagaacattaaaataatt 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||    
T  29738530 aactaaaaagaccttctattgattgtaagatataaacttgattaaaactactgcttggtggaatattagaacagttactcagtagaacattaaaataatt 29738431  T
Q  340 ggcttgaaccatagttcaacttccacgactaaacaattcatgcacaagccttcctaacaagattattatgtttacagcatttagtcttgtcatattttta 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29738430 ggcttgaaccatagttcaacttccacgactaaacaattcatgcacaagccttcctaacaagattattatgtttacagaatttagtcttgtcatattttta 29738331  T
Q  440 ttaaaaacatgaatgc 455  Q
    ||||||||||||||||    
T  29738330 ttaaaaacatgaatgc 29738315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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