View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9718_high_5 (Length: 418)
Name: NF9718_high_5
Description: NF9718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9718_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 1733835 - 1733441
Alignment:
| Q |
19 |
tgaaataccatttgtttgttcgtgtagacggtagctatcaacttcaggcctgaattgtacttctggttaaatgaaaacttgaatgtgatacagattttcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1733835 |
tgaaataccatttgtttgttcgtgtagacggtagctatcaacttcaggcctgaattgtacttctggttaaatgaaaacttgaatgtgatacagattttcc |
1733736 |
T |
|
| Q |
119 |
tcatagcattaatttactttgatcctgattttgattctcatttggaatttcaatttcacctctgatttaggaaatattgaat-aatatattgagaataac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1733735 |
tcatagcattaatttactttgatcctgattttgattctcatttggaatttcaatttcacctctgatttaggaaatattgaataaatatattgagaataac |
1733636 |
T |
|
| Q |
218 |
atatttcaaatcatatttaatagagattactaaatttgtacaacattttaagcataaatgattaaaataattatttagaaggtaaggatcataataaatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1733635 |
atatttcaaatcatatttaatagagattactaaatttgtacaacattttaagcataaatgattaaaataattatttagaaggtaaggatcataataaatt |
1733536 |
T |
|
| Q |
318 |
ttgagcaatttttaaaagtcttgtatacttgaannnnnnngttcataaccct-ccaatatcacttgaaggccactgctgctagctacctatgcta |
411 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1733535 |
ttgagcaatttttaaaagtcatgtatacttgagtttttttgttcataaccctcccaatatcacttgaaggccactgctgctagctacctttgcta |
1733441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 35305150 - 35305099
Alignment:
| Q |
69 |
tgaattgtacttctggttaaatgaaaacttgaatgtgatacagattttcctc |
120 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||| || ||| ||||||||| |
|
|
| T |
35305150 |
tgaattgaagttctggttaaatgaaaacttgaatgcgaaacatattttcctc |
35305099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University