View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9718_high_6 (Length: 411)
Name: NF9718_high_6
Description: NF9718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9718_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 168 - 390
Target Start/End: Original strand, 12095102 - 12095326
Alignment:
| Q |
168 |
tgatcctgcctttctctactctttttcgacgttataaaatttattgaatatactttctgttattgagtgagtataacagaaagtggtgtattttgttgta |
267 |
Q |
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| T |
12095102 |
tgatcctgcctttctctactctttttcgacgttataaaatttattgaatatactttctgttattgaatgagtataacagaaagtggtgtattttgttgta |
12095201 |
T |
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| Q |
268 |
ttatgcagctgataatttgttgcaattaaggta--tttgagcaagaaatgttattttcattgccatctgaacatgtgttatttcttttgctgatggatat |
365 |
Q |
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| T |
12095202 |
ttatgcagctgataatttgttgcaattaaggtatttttgagcaagaaatgttattttcattgccatcagaacatgtgttatttcttttgctgatggatat |
12095301 |
T |
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| Q |
366 |
gtcattcatattttgctcatcgcta |
390 |
Q |
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| T |
12095302 |
gtcattcatattttgctcatcgcta |
12095326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 27 - 174
Target Start/End: Original strand, 12106652 - 12106792
Alignment:
| Q |
27 |
tctatatccgctagaagggttttggttctctactcttttaggatctgatttcgcactggttcctttctttaactaaaatcttagtacctaccttatttta |
126 |
Q |
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| T |
12106652 |
tctatatctgctagaagggtt--ggttctctactcttttacgatgtgatttctcactggttcctttcggtaactaaaaccttagtacctgcc-----ttg |
12106744 |
T |
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| Q |
127 |
tttctggttcctgtcgtataatgcaactaagtattatgttatgatcct |
174 |
Q |
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| T |
12106745 |
tttctggttcctgtcgtataatgcaacgaagtattatgttatgatcct |
12106792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 386
Target Start/End: Original strand, 12078656 - 12078745
Alignment:
| Q |
287 |
ttgcaattaaggtatttgagcaagaaatgttattttcattgccatctgaacatgtgttatttcttttgctgatggatatgtcattcatattttgctcatc |
386 |
Q |
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| T |
12078656 |
ttgcagttaaggtatttgatcaagaaatgtcattttcattgccttc----------ttatctcttttgctgatggatatgtcattcaaatgtggctcatc |
12078745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 190 - 278
Target Start/End: Original strand, 32143298 - 32143386
Alignment:
| Q |
190 |
ttttcgacgttataaaatttattgaatatactttctgttattgagtgagtataacagaaagtggtgtattttgttgtattatgcagctg |
278 |
Q |
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| T |
32143298 |
ttttcgacggtataaattttattgaatatactttctgttattggatgagtataacagaaagtggtgtattttgttgtattatgcagctg |
32143386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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