View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9718_high_7 (Length: 345)
Name: NF9718_high_7
Description: NF9718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9718_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 44611630 - 44611312
Alignment:
| Q |
11 |
cataggtgtgatggggcttccagctggaactttggttctatacttgtgtgaaccaagaagaaaaactggaatggagagcaatattgaagcagttgataca |
110 |
Q |
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| T |
44611630 |
cataggtgtgatggggcttccagctggaactttggttctatacttgtgtgaaccaagaagaaaaactggaatggagagcaatattgaagcagttgataca |
44611531 |
T |
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| Q |
111 |
cctaaaccccactgccatcctttgttgtcttcaatccacaccacaaaagtaactgcaaacaatgcaccacatgacaggctgaagacaaagtagttaaaaa |
210 |
Q |
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| T |
44611530 |
cctaaaccccactgccatcctttgttgtcttcaatccacaccacaaaagtaactgcaaacaatgcaccacatgacaggctgaagacaaagtagttaaaaa |
44611431 |
T |
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| Q |
211 |
attcagaccttttctttcttccttctggtgtagtctcatcaaattgttcagctccatgaggaggaagtgaaccttttattccccctactccaagtgccac |
310 |
Q |
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| T |
44611430 |
attcagaccttttctttcttccttctggtgtagtctcatcaaattgttcagctccatgaggaggaagtgaaccttttattccccctactccaagtgccac |
44611331 |
T |
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| Q |
311 |
aagatagaggcctgcaaat |
329 |
Q |
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| T |
44611330 |
aagatagaggcctgcaaat |
44611312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 25171801 - 25171871
Alignment:
| Q |
138 |
tcttcaatccacaccacaaaagtaactgcaaacaatgcaccacatgacaggctgaagacaaagtagttaaa |
208 |
Q |
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| T |
25171801 |
tcttcaatccacacaacaaaagtaactgcaataagtgcaccacatgctaagctaaagatgaagtagttaaa |
25171871 |
T |
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