View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9718_high_9 (Length: 330)
Name: NF9718_high_9
Description: NF9718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9718_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 50240343 - 50240041
Alignment:
| Q |
1 |
caagtttttggaaccaagtttgagtaggaaaagtggtccataagtttgtgacatggatgcaagcatacgatgattgagatcattgccaacttgaagccag |
100 |
Q |
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| T |
50240343 |
caagtttttggaaccaagtttgagtaggaaaagtggtccataagtttgtgacatggatgcaagcatacgatgattgagatcattgccaacttgaagccag |
50240244 |
T |
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| Q |
101 |
tttccaaatataggaacagaaaaagggcttggaggtgaagaatttttcttatggctgtttgaattggaattagttaggtatataaaccataataataatg |
200 |
Q |
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| T |
50240243 |
tttccaaatataggaacagaaaaagggcttggaggtgaagaatttttcttatggctgtttgaattggaattagttaggtatataaaccataataataatg |
50240144 |
T |
|
| Q |
201 |
tgatgaaagtggcacaagcaattgaggttgagagagagggtgtaaaaaagagttttgtagtaattattggaatgagtatagcaaaaagagtgaaaaatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50240143 |
tgatgaaagtggcacaagcaattgaggttgagagagagggtgtaaaaaagagttttgtagtaattattggaatgagtatagcaaaaagagtgaaaaatat |
50240044 |
T |
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| Q |
301 |
tgg |
303 |
Q |
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||| |
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| T |
50240043 |
tgg |
50240041 |
T |
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