View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9718_low_1 (Length: 623)
Name: NF9718_low_1
Description: NF9718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9718_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 570; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 19 - 612
Target Start/End: Original strand, 331499 - 332092
Alignment:
| Q |
19 |
cctccctcatgctcagacaatgccacttacttctccactccaagaaaccaggtacgtttctcaaatattatgcatgcttttatgatacttattagttatt |
118 |
Q |
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| T |
331499 |
cctccctcatgctcagacaatgcgactcacttctccactccaagaaaccaggtacgtttctcaaatattatgcatgcttttatgatacttattagttatt |
331598 |
T |
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| Q |
119 |
tatttcgtttctttcttggttcttgaaaatgtatatatgtgatcagagattaggcatggcccacattgaaaacaattgcttctctgatattgatgaatgg |
218 |
Q |
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| T |
331599 |
tatttcgtttctttcttggttcttgaaaatgtatatatgtgatcagagattaggcatggcccacattgaaaacaattgcttctctgatattgatgaatgg |
331698 |
T |
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| Q |
219 |
ttggaacatgccaataagttttgcaaatccttcatcaatcatcatcacactgaggaaaatcttgaagcaggttagttggtttgcattagtacgttatata |
318 |
Q |
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| T |
331699 |
ttggaacatgccaataagttttgcaaatccttcttcaatcatcatcacactgaggaaaatcttgaagcaggttagttggttttcattagtacgttatata |
331798 |
T |
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| Q |
319 |
tgattcatgtcatataatcaatgatttctggttttgtatttgatcagaaacaaggcaaaatggaaatccacaagacttgatgagaatgtcagcagtatgc |
418 |
Q |
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| T |
331799 |
tgattcatgtcaaataatcaatgatttctggttttgtatttgatcagaaacaaggcaaaatggaaatccacaagacttgatgagaatgtcagcagtatgc |
331898 |
T |
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| Q |
419 |
aacaatgacctaacagctcaagagcatgaattttacaacatagtattaccctcagttagagaagaaagtccacttcctcgtactattacctcctgcataa |
518 |
Q |
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| T |
331899 |
aacaaggacctaacagctcaagagcatgaattttacaacatagtattaccctcagttagagaagaaagtccacttcctcgtactattacctcctgcataa |
331998 |
T |
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| Q |
519 |
acagacatggagggtgcagcagcaatcccaaacttgaagctgatcatgaagatgtacgtaacaaagccaagcatcttcaacttatgcacaggtt |
612 |
Q |
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| T |
331999 |
acagacatggagggtgcagcagcaatcccaaacttgaagctgatcatgaagatgtacgtaacaaagccaagcatcttcaacttatgcacaggtt |
332092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 1107326 - 1107264
Alignment:
| Q |
198 |
ttctctgatattgatgaatggttggaacatgccaataagttttgcaaatccttcatcaatcat |
260 |
Q |
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| T |
1107326 |
ttctctgatattgttgaatggttggaacatgccaataagtattgcaaatccttcttcaatcat |
1107264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 155 - 301
Target Start/End: Original strand, 11250477 - 11250617
Alignment:
| Q |
155 |
atgtgatcagagattaggcatggcccacattgaaaacaattgcttctctgatattgatgaatggttggaacatgccaataagttttgcaaatccttcatc |
254 |
Q |
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| T |
11250477 |
atgtgatcagagattaggtatgacctacgttgaaaacaattgcttctttgatattgatgaatggttggaacatgccaataagttttgcaaatccttca-- |
11250574 |
T |
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| Q |
255 |
aatcatcatcacactgaggaaaatcttgaagcaggttagttggtttg |
301 |
Q |
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| T |
11250575 |
----atcatcacactgaggaaaatcttgaagccggttagttggtttg |
11250617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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