View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9718_low_11 (Length: 337)
Name: NF9718_low_11
Description: NF9718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9718_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 172 - 329
Target Start/End: Original strand, 54036920 - 54037077
Alignment:
| Q |
172 |
attaataaaatttacttcttaagaaaaatgttaattgattgctctctctctgtgtttactgttaggatggccatgctactgccaaatgtggacatgagtt |
271 |
Q |
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| T |
54036920 |
attaataaaatttacttcttaagaaaaatgttaattgattgctctctctctctgtttactgttaggatggccatgctactgccaaatgtggacatgagtt |
54037019 |
T |
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| Q |
272 |
tgagcaaaataacaaaaaccatgaagaagaacaacaaaaagttattcttcttcttctc |
329 |
Q |
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| T |
54037020 |
tgagcaaaataacaaaaaccatgaagaagaacaacaaaaagttaatcttcttcttctc |
54037077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 54036768 - 54036879
Alignment:
| Q |
18 |
ctaatcgtcttgtatgttgctcaggctgaggttgtattgtttgattgatatttataactttgaggtaagtagtgttggtccctcctatttcattttaact |
117 |
Q |
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| T |
54036768 |
ctaatcgtcttgtatgttgctcaggctgagcttgtattgtttgattgatatttataactttgaggcaagtagtgttggtccctcctgtttcattttaact |
54036867 |
T |
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| Q |
118 |
gattggactcta |
129 |
Q |
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| T |
54036868 |
gattggactcta |
54036879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 310
Target Start/End: Complemental strand, 1080384 - 1080272
Alignment:
| Q |
195 |
aaaaatgttaattgattgctctctctctgtgtttactgttaggatggccatgctactgccaaatgtggacatgagtttgagcaaaataacaaaaaccatg |
294 |
Q |
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| T |
1080384 |
aaaaatgttaattgactgctctctctctgt---tactgttatgatggccacattactgccttgagtggacatgcgattgagcaaaataacaagaaccaag |
1080288 |
T |
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| Q |
295 |
aagaagaacaacaaaa |
310 |
Q |
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| T |
1080287 |
aagaagaacaacaaaa |
1080272 |
T |
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