View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9718_low_15 (Length: 302)
Name: NF9718_low_15
Description: NF9718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9718_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 128 - 287
Target Start/End: Original strand, 14765404 - 14765560
Alignment:
| Q |
128 |
cctcctattgatgaaaaccaatagcagaatggccaagtcatctccataaaaaagataaaacannnnnnnnnnngttacaaagagataaaacatatgaaac |
227 |
Q |
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| T |
14765404 |
cctcctattgatgaaaaccaatagcagaatggccaagttatcgccatcaaaaagataaaac---tttttttttgttacaaagagataaaacatatgaaac |
14765500 |
T |
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| Q |
228 |
caagaaattgactccaagccctacacaaagactcccaaacaagcccctaaacaacaatat |
287 |
Q |
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| T |
14765501 |
taagaaattgactccaaaccctacacaaagactcccaaacaagcccctaaacaacaatat |
14765560 |
T |
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