View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9718_low_17 (Length: 278)
Name: NF9718_low_17
Description: NF9718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9718_low_17 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 7862540 - 7862271
Alignment:
| Q |
1 |
gttatgaaaactaagaatctttgaatgtgactttataaatattgtactaaaaatgttttctagtgttaaatcaaagagtccatgtaatcaagcttcaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7862540 |
gttatgaaaactaagaatctttgaatgtgacttcataaatattgtactaaaaatgttttctagtgttaaatcagagagtccatgtaatcaagcttcaaat |
7862441 |
T |
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| Q |
101 |
gagcctcagcgatagtgtttcaaggtgaagtgaaaggtataagaaatagggtaatctaatagacaggggaggaaaataagatagatagaaacacaggcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7862440 |
gagcctcagcgatagtgtttcaaggtgaagtgaaaggtataagaaatagggtaatctaatagacaggggaggaaaataagatagatggaaacacaggcaa |
7862341 |
T |
|
| Q |
201 |
caaacctttaactaagatagataacaacatgcattttcaatatctgagaatctaattatgcctctctgct |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7862340 |
caaacctttaactaagatagataacaacatgcattttcaatatctgagaatctaattatgcctctctgct |
7862271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 7862685 - 7862581
Alignment:
| Q |
1 |
gttatgaaaactaagaatctttgaatgtgactttataaatattgtactaaaaatgttttctagtgttaaatcaaagagtccatgtaatcaagcttcaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7862685 |
gttatgaaaactaagaatctttgaatgtgactttataaatattgtactaaaaatgttttctagtgttaaatcaaagagtccatgtaatcaagcttcaaat |
7862586 |
T |
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| Q |
101 |
gagcc |
105 |
Q |
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||||| |
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| T |
7862585 |
gagcc |
7862581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 202
Target Start/End: Original strand, 30822122 - 30822241
Alignment:
| Q |
84 |
gtaatcaagcttcaaatgagcctc-agcgatagtgtttcaaggtgaagtgaaaggtataagaaatagggtaatctaatagacaggggaggaaaataagat |
182 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||| |||| ||||| | |||||||||||||||||||||| ||| ||||| |||| || |
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| T |
30822122 |
gtaatcaagcttcaaatgagcctccaataatagtgtttcaaggtgcagtgcaaggtctgagaaatagggtaatctaatagatggggaaggaagataaaat |
30822221 |
T |
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| Q |
183 |
agatagaaacacaggcaaca |
202 |
Q |
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|||||| |||||| |||||| |
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| T |
30822222 |
agatagcaacacaagcaaca |
30822241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 202
Target Start/End: Original strand, 30812859 - 30812978
Alignment:
| Q |
84 |
gtaatcaagcttcaaatgagcctc-agcgatagtgtttcaaggtgaagtgaaaggtataagaaatagggtaatctaatagacaggggaggaaaataagat |
182 |
Q |
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|||||||||||||||||||||||| | ||||||||| ||| || |||| ||||| | | |||||||||||||||||||| ||| ||||| |||| || |
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| T |
30812859 |
gtaatcaagcttcaaatgagcctccaataatagtgttttaagttgcagtgcaaggtctgaaaaatagggtaatctaatagatggggaaggaagataaaat |
30812958 |
T |
|
| Q |
183 |
agatagaaacacaggcaaca |
202 |
Q |
| |
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|||||| |||||| |||||| |
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| T |
30812959 |
agatagcaacacaagcaaca |
30812978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 187
Target Start/End: Complemental strand, 6672919 - 6672815
Alignment:
| Q |
84 |
gtaatcaagcttcaaatgagcctcagcga-tagtgtttcaaggtgaagtgaaaggtataagaaatagggtaatctaatagacaggggaggaaaataagat |
182 |
Q |
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|||||||||||||||||| ||||| | | ||||||||||||||| || | ||||| |||||||||||||||||||||| ||||||||| ||| || |
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| T |
6672919 |
gtaatcaagcttcaaatgggcctcggataatagtgtttcaaggtgcagcgcaaggtcggagaaatagggtaatctaatagatgggggaggaagttaaaat |
6672820 |
T |
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| Q |
183 |
agata |
187 |
Q |
| |
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||||| |
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| T |
6672819 |
agata |
6672815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 19840115 - 19840065
Alignment:
| Q |
113 |
tagtgtttcaaggtgaagtgaaaggtataagaaatagggtaatctaataga |
163 |
Q |
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||||||||||||||| |||| ||||| | ||||| |||||||||||||||| |
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| T |
19840115 |
tagtgtttcaaggtgcagtgcaaggtctgagaaaaagggtaatctaataga |
19840065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 39939638 - 39939691
Alignment:
| Q |
1 |
gttatgaaaactaagaatctttgaatgtgactttataaatattgtactaaaaat |
54 |
Q |
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| T |
39939638 |
gttatgaaaactaagaatctttgaacgtgactttataaatattgtactaaaaat |
39939691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 9627 - 9675
Alignment:
| Q |
115 |
gtgtttcaaggtgaagtgaaaggtataagaaatagggtaatctaataga |
163 |
Q |
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|||||||||||||||||| ||| | |||||||||||||||||||||||| |
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| T |
9627 |
gtgtttcaaggtgaagtgcaagatctaagaaatagggtaatctaataga |
9675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 11830746 - 11830696
Alignment:
| Q |
113 |
tagtgtttcaaggtgaagtgaaaggtataagaaatagggtaatctaataga |
163 |
Q |
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||||||||||||||| |||| ||||| | |||||||||||||||||||||| |
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| T |
11830746 |
tagtgtttcaaggtgcagtgcaaggtctgagaaatagggtaatctaataga |
11830696 |
T |
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