View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9718_low_18 (Length: 263)
Name: NF9718_low_18
Description: NF9718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9718_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 100 - 249
Target Start/End: Complemental strand, 12106121 - 12105972
Alignment:
| Q |
100 |
aattctaccgaactcaccgctgatctaaacatgcacttagtgtctaccttattcaacatgttttctatttatctattaattaataatactaatttaaggg |
199 |
Q |
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| T |
12106121 |
aattctaccaaactcaccgctgatctaaacatgcacttagtgtctaccttcttcaacatgttttctgtttatctcttaattaataatactaatttaaggg |
12106022 |
T |
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| Q |
200 |
tccttcactgacattgcaaaagtgaccaagaaaccaaaagcttgtctgcc |
249 |
Q |
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| T |
12106021 |
tccttcatcgacatttcaaaattgaccaacaaacctaaatcttgtctgcc |
12105972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 10675933 - 10676056
Alignment:
| Q |
115 |
accgctgatctaaacatgcacttagtgtctaccttattcaacatgttttctatttatctattaattaataatactaatttaagggtccttcactgacatt |
214 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||| |
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| T |
10675933 |
accgctgatctaaacatgtacttagtgtctaccttcttcaacatgttttctatttatctcttaattaatgataataatttaagggtccttcactgacatt |
10676032 |
T |
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| Q |
215 |
gcaaaagtgaccaagaaaccaaaa |
238 |
Q |
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| T |
10676033 |
gcaaaagtgaccaaggaaccaaaa |
10676056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 12095096 - 12095017
Alignment:
| Q |
3 |
catatggtaaagaatcccgggtaaacattggtgtagatatacttgtatacagttaattgtattagaatgcgattagtagt |
82 |
Q |
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| T |
12095096 |
catatggtaaagaatcccgggtaaacattggtgtagatatacttgtatacagttaattgtattagaatgcgattagtagt |
12095017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 12094726 - 12094668
Alignment:
| Q |
80 |
agttagacagcaacaccagtaattctaccgaactcaccgctgatctaaacatgcactta |
138 |
Q |
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| T |
12094726 |
agttagacggcaacaccagtaattctaccgaactcaccgctgatctaaacatgcactta |
12094668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 12106549 - 12106469
Alignment:
| Q |
1 |
ctcatatggtaaagaatcccgggtaaacattggtgtagatatacttgtatacagttaattgtattagaatgcgattagtagt |
82 |
Q |
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| T |
12106549 |
ctcatatggtgaagaatcccgt-taaatatcggaatagatattcttgtatacagttaattgtattagaatgcaattagtagt |
12106469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 242
Target Start/End: Complemental strand, 1404593 - 1404447
Alignment:
| Q |
100 |
aattctaccgaactcaccgctgatctaaacatgcacttagt---gtctaccttattcaacatgttttctatttatctattaattaataatactaatttaa |
196 |
Q |
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|||||||| |||||| | || |||| | ||||||||||||| || |||||| |||||| ||||| ||||| ||| ||| ||||||||| ||||||| |
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| T |
1404593 |
aattctactgaactccctgccgatccagacatgcacttagtagtgtttaccttcttcaacgtgtttgttatttgtctttta-ttaataataacaatttaa |
1404495 |
T |
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| Q |
197 |
gggtccttcactgaca--ttgcaaaagtgaccaagaaaccaaaagctt |
242 |
Q |
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| T |
1404494 |
gggtccttcactcacacattgcaaaagtgaccaagaaaccaaaagctt |
1404447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 45809438 - 45809500
Alignment:
| Q |
100 |
aattctaccgaactcaccgctgatctaaacatgcacttagtgtctaccttattcaacatgttt |
162 |
Q |
| |
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||||||||||||||| || | |||| |||||| ||||||||||||||||| |||||||||||| |
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| T |
45809438 |
aattctaccgaactcgccaccgatccaaacatacacttagtgtctaccttcttcaacatgttt |
45809500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 45809515 - 45809555
Alignment:
| Q |
210 |
acattgcaaaagtgaccaagaaaccaaaagcttgtctgcct |
250 |
Q |
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| T |
45809515 |
acattgcaaaagtaacctagaaaccaaaagcttatctgcct |
45809555 |
T |
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