View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9718_low_20 (Length: 250)
Name: NF9718_low_20
Description: NF9718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9718_low_20 |
 | |
|
| [»] scaffold0008 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 31484197 - 31484432
Alignment:
| Q |
3 |
tgcaccaccggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggcga |
102 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31484197 |
tgcaccactggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggcga |
31484296 |
T |
|
| Q |
103 |
tcgaaaacctttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatatttga |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31484297 |
tcgaaaacctttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgacaaccattttatgattatatatttga |
31484396 |
T |
|
| Q |
203 |
aggttggttgtccaattcctcccacttctacacctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
31484397 |
aggttggttgtccaattcctcccacttctacacctt |
31484432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 14294718 - 14294942
Alignment:
| Q |
7 |
ccaccggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggcgatcga |
106 |
Q |
| |
|
|||||| | ||||||||||||||| |||| |||||||||||| |||||| |||||||| |||||||| ||| || | ||||| |||||||||| || || |
|
|
| T |
14294718 |
ccaccgaaaaaatggatgatcatgacggatatgagtttcctcattgcacatagatacaagcatgtggtggttctattgtccatcgagaaagggcaattga |
14294817 |
T |
|
| Q |
107 |
aaacctttttccctctatgtggtgcaccatcacatagagactgaatgatgtg-catgacacatgtgaatgataaccattttatgattatatatttgaagg |
205 |
Q |
| |
|
||||||||||||||||| |||||| ||| ||||||||||| |||||| |||| || | ||||||||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
14294818 |
aaacctttttccctctacgtggtgaaccttcacatagagattgaatgttgtgtcaag-cacatgtgaataacaaccattttatgatgatatatttgaagg |
14294916 |
T |
|
| Q |
206 |
ttggttgtccaattcctcccacttct |
231 |
Q |
| |
|
||||| |||||||||| |||||||| |
|
|
| T |
14294917 |
atggttatccaattccttccacttct |
14294942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 10927061 - 10927288
Alignment:
| Q |
1 |
cctgcaccaccggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggc |
100 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| || || ||||||||| ||||||||||||||||||| | | ||| || | ||||||| ||||||| |
|
|
| T |
10927061 |
cctgcaccaccgaataaatggatgaccatgccatatatgggtttcctcatggcacagagatacaaacatgcgatggttctattgtccattgc-aaagggc |
10927159 |
T |
|
| Q |
101 |
gatcgaaaacctttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatattt |
200 |
Q |
| |
|
|||| |||||| ||| |||||||| ||||||| |||||||||||||| ||||||| | |||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
10927160 |
gatcagaaacctatttgcctctatgcggtgcactgccacatagagactgattgatgtgtctaacacatgtgaatgaaaaccattttatgataatatattt |
10927259 |
T |
|
| Q |
201 |
gaaggttggttgtccaattcctcccactt |
229 |
Q |
| |
|
||||| |||||||| |||||||||||||| |
|
|
| T |
10927260 |
gaaggatggttgtcaaattcctcccactt |
10927288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 27546825 - 27546994
Alignment:
| Q |
58 |
agatacaaacatgtggttgttatactatccattgagaaagggcgatcgaaaacctttttccctctatgtggtgcaccatcacatagagactgaatgatgt |
157 |
Q |
| |
|
||||||||||||||||||||| | || ||||| | ||||| ||||||||||| ||||||| ||||| ||||||| ||| |||||| | ||||||||| |
|
|
| T |
27546825 |
agatacaaacatgtggttgttctgctgtccatcgtgaaagagcgatcgaaaatatttttcca-ctatgcggtgcacaatcgcatagaaatcgaatgatgt |
27546923 |
T |
|
| Q |
158 |
gcatgacacatgtgaatgataaccattttatgattatatatttgaaggttggttgtccaattcctcccact |
228 |
Q |
| |
|
| | || ||||||||||| |||||||||||||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
27546924 |
gtctaactcatgtgaatgacaaccattttatgatggtgtatttgaagaatggttgtccaattcctcccact |
27546994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 31043172 - 31042949
Alignment:
| Q |
3 |
tgcaccaccggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggcga |
102 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| |||||||||||| || ||||||||||||||||||||| ||| |||| || |||| ||||||| || |
|
|
| T |
31043172 |
tgcaccaccggataaatggatgaccatgccggatatgagtttcctcattgtacagagatacaaacatgtggtggttctactgtctattgcgaaagggtga |
31043073 |
T |
|
| Q |
103 |
tcgaaaacctttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatatttga |
202 |
Q |
| |
|
| | |||||| |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
31043072 |
ttggaaacctatttccctctatgtggtgcaccatcacatagaggtcgattgatgtgtctgacacatgtgaatgacaaccattttatgataatatatttga |
31042973 |
T |
|
| Q |
203 |
aggttggttgtccaattcctccca |
226 |
Q |
| |
|
| | ||||| |||||||||||||| |
|
|
| T |
31042972 |
atgatggttttccaattcctccca |
31042949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 31058399 - 31058223
Alignment:
| Q |
1 |
cctgcaccaccggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggc |
100 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| |||| |||||||||||| || ||||||||||||||||||||| ||| |||| || |||| ||||||| |
|
|
| T |
31058399 |
cctgcaccactggataaatggatgaccatgcaggatatgagtttcctcattgtacagagatacaaacatgtggtggttctactgtctattgcgaaagggt |
31058300 |
T |
|
| Q |
101 |
gatcgaaaacctttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgat |
177 |
Q |
| |
|
||| | || ||| ||||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
31058299 |
gattggaaccctatttccctctatgtggtgcaccataacatagaggctgattgatgtgtctgacacatgtgaatgat |
31058223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 21941255 - 21941465
Alignment:
| Q |
13 |
gataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggcgatcgaaaacct |
112 |
Q |
| |
|
|||||||||||||||||| | || ||| ||| |||| |||||| |||||||| |||||||| ||| |||| ||||| | ||||||| ||| |||| | |
|
|
| T |
21941255 |
gataaatggatgatcatgtcgaatatgaattttctcattgcacatagatacaagcatgtggtggttctactgtccatcaataaagggcaatcagaaactt |
21941354 |
T |
|
| Q |
113 |
ttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatatttgaaggttggttg |
212 |
Q |
| |
|
||||||||||| |||||||| | ||| || | ||||||| || | |||||||||||||| || |||||||||| ||||||||||| |||||| |
|
|
| T |
21941355 |
ttttccctctactcggtgcacctttgcattgacaacgaatgatttgtctaacacatgtgaatgaaaattattttatgatggtatatttgaagaatggttg |
21941454 |
T |
|
| Q |
213 |
tccaattcctc |
223 |
Q |
| |
|
||||||||||| |
|
|
| T |
21941455 |
tccaattcctc |
21941465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 20534600 - 20534813
Alignment:
| Q |
11 |
cggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggcgatcgaaaac |
110 |
Q |
| |
|
||||||||| | | || |||| |||| || ||||||| | | || ||||||||| |||||||| ||| |||| ||||| |||||| || ||||||||| |
|
|
| T |
20534600 |
cggataaatagctaattatgccggatatgggtttccttattccatagagatacatgcatgtggtggttctactgtccatcaagaaagtgcaatcgaaaac |
20534699 |
T |
|
| Q |
111 |
ctttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatatttgaaggttggt |
210 |
Q |
| |
|
||||||||||||| | ||| ||| || |||| |||| |||||| ||| | |||| |||||| || ||||||||||| ||||||||| || |||| |
|
|
| T |
20534700 |
ctttttccctctacgcagtgaaccttcgcataaagaccgaatgaagtgtctagcacacgtgaatatcaatcattttatgatggtatatttgagggatggt |
20534799 |
T |
|
| Q |
211 |
tgtccaattcctcc |
224 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
20534800 |
tgtccaattcctcc |
20534813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 31056987 - 31056930
Alignment:
| Q |
172 |
aatgataaccattttatgattatatatttgaaggttggttgtccaattcctcccactt |
229 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
31056987 |
aatgacaaccattttatgataatatatttgaatgatggttgtccaattcctcccactt |
31056930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 11848194 - 11848135
Alignment:
| Q |
165 |
acatgtgaatgataaccattttatgattatatatttgaaggttggttgtccaattcctcc |
224 |
Q |
| |
|
|||||||||||| ||||||||||| || | |||||||||| |||||||||||||||||| |
|
|
| T |
11848194 |
acatgtgaatgacaaccattttattatggtttatttgaaggatggttgtccaattcctcc |
11848135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 23350577 - 23350515
Alignment:
| Q |
167 |
atgtgaatgataaccattttatgattatatatttgaaggttggttgtccaattcctcccactt |
229 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
23350577 |
atgtgaatgacaaccattttatggcattggatttgaaggatggttgtccaattcctcccactt |
23350515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 34827923 - 34827877
Alignment:
| Q |
3 |
tgcaccaccggataaatggatgatcatgctggatttgagtttcctca |
49 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
34827923 |
tgcaccacgggataaatggatgaccatgccggatatgagtttcctca |
34827877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 26674491 - 26674263
Alignment:
| Q |
1 |
cctgcaccaccggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggc |
100 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| |||| |||||||||||| |||||| ||||||||||| |||||| | |||| |||||||||||| || |
|
|
| T |
26674491 |
cctgcaccaccagataaatggatgaccatgccggatatgagtttcctcattgcacaaagatacaaacacatggttggtctactgtccattgagaaaaagc |
26674392 |
T |
|
| Q |
101 |
gatcgaaaacctttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatattt |
200 |
Q |
| |
|
|||| |||||||||||||| ||| | |||||| ||||||||||| ||| ||||||| || ||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
26674391 |
gatcagaaacctttttccctttatacgatgcaccgtcacatagagagtgattgatgtgtctggcacatgtgaatgacaaccattttatgataatatattt |
26674292 |
T |
|
| Q |
201 |
gaaggttggttgtccaattcctcccactt |
229 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
|
|
| T |
26674291 |
aaaggatggttgtccaattcctcccactt |
26674263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 16667526 - 16667637
Alignment:
| Q |
14 |
ataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggcgatcgaaaacctt |
113 |
Q |
| |
|
|||||||||||| |||| ||||| | ||||||||| |||||||||||||||||| || ||||| |||||| ||||||||||||||||||| ||||||| |
|
|
| T |
16667526 |
ataaatggatgaccatgttggatataggtttcctcattgcacagagatacaaacacgtcattgttctactatacattgagaaagggcgatcggaaacctt |
16667625 |
T |
|
| Q |
114 |
tttccctctatg |
125 |
Q |
| |
|
||| |||||||| |
|
|
| T |
16667626 |
ttttcctctatg |
16667637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 16668370 - 16668462
Alignment:
| Q |
137 |
cacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatatttgaaggttggttgtccaattcctcccactt |
229 |
Q |
| |
|
|||||| ||| ||| | ||||| ||| ||||||||||||| |||||||||||||| ||||| |||||| |||||||| ||||||||||||| |
|
|
| T |
16668370 |
cacatacagagtgattaatgtgtatggcacatgtgaatgacaaccattttatgataatatacttgaagaatggttgtcatattcctcccactt |
16668462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 12847522 - 12847633
Alignment:
| Q |
7 |
ccaccggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggcgatcga |
106 |
Q |
| |
|
||||| |||||||||||||||||| |||| |||||||||||| || ||| ||||| || |||||||| ||| |||| || || | ||||| | ||||| |
|
|
| T |
12847522 |
ccaccagataaatggatgatcatgtcggatatgagtttcctcattggacaaagatataagcatgtggtagttctactgtctataaaaaaaggacaatcga |
12847621 |
T |
|
| Q |
107 |
aaacctttttcc |
118 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12847622 |
aaacctttttcc |
12847633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 9138904 - 9138858
Alignment:
| Q |
3 |
tgcaccaccggataaatggatgatcatgctggatttgagtttcctca |
49 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| || ||||||||| |
|
|
| T |
9138904 |
tgcaccacgggataaatggatgatcatgcaggatatgggtttcctca |
9138858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 14825116 - 14825160
Alignment:
| Q |
85 |
tccattgagaaagggcgatcgaaaacctttttccctctatgtggt |
129 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
14825116 |
tccattgggaaagggcgatcggtaacctatttccctctatgtggt |
14825160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 13423724 - 13423519
Alignment:
| Q |
14 |
ataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggcgatcgaaaacctt |
113 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| ||| | |||||||||||||||||||||| ||| ||||||| |||||||||||| ||||||| |
|
|
| T |
13423724 |
ataaatggatgatcatgccggatatgagtttcctcattgcgctgagatacaaacatgtggttgtttcactgtccattgggaaagggcgatcataaacctt |
13423625 |
T |
|
| Q |
114 |
tttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatatttgaaggttggttgt |
213 |
Q |
| |
|
||||||||||| ||||||| |||| |||||| | |||||||||| |||||||||||||| | |||||||||||||| |||||||||||| | ||||| |
|
|
| T |
13423624 |
tttccctctatatggtgcatcatcgcatagaaatcgaatgatgtgtttgacacatgtgaatcacaaccattttatgatggtatatttgaaggatagttgt |
13423525 |
T |
|
| Q |
214 |
ccaatt |
219 |
Q |
| |
|
|||||| |
|
|
| T |
13423524 |
ccaatt |
13423519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 25477983 - 25477756
Alignment:
| Q |
1 |
cctgcaccaccggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggc |
100 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||| || ||||||||| |||| |||||||||| | ||||| |||| |||||||||||||||| |
|
|
| T |
25477983 |
cctgcaccactggataaatggacgactatgctggatatgggtttcctcattgcaaagagatacaactgcggtgttgtcctactgtccattgagaaagggc |
25477884 |
T |
|
| Q |
101 |
gatcgaaaacctttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatattt |
200 |
Q |
| |
|
|||| |||||||||| |||||||| | || || |||||| | | || ||||||| | || || ||||||||| |||||||| ||||| |||||||| |
|
|
| T |
25477883 |
gatctgaaaccttttt-cctctatgcgatgaacagccacatacaaagcgattgatgtgtacgaaacgtgtgaatgacaaccatttcatgataatatattt |
25477785 |
T |
|
| Q |
201 |
gaaggttggttgtccaattcctcccactt |
229 |
Q |
| |
|
||||| || ||||| | ||||||||||| |
|
|
| T |
25477784 |
gaaggatgattgtcatactcctcccactt |
25477756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 45295252 - 45295037
Alignment:
| Q |
14 |
ataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggcgatcgaaaacctt |
113 |
Q |
| |
|
|||||| |||||||||| |||| |||||||||||| |||| ||| ||||||| |||||| ||| ||| ||| | ||||||| ||| ||||||| |
|
|
| T |
45295252 |
ataaattgatgatcatgtcggatatgagtttcctcattgcaaaga--tacaaacgtgtggtggttccactcctcatcaacaaagggcaatcataaacctt |
45295155 |
T |
|
| Q |
114 |
ttt-ccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatatttgaaggttggttg |
212 |
Q |
| |
|
||| ||||||| |||||||||| || |||| ||| ||||||||||| | | |||||||||| |||||||| |||| ||||||||||| | | |||| |
|
|
| T |
45295154 |
ttttccctctacgtggtgcaccttcgcatatagattgaatgatgtgtctaggatatgtgaatgacaaccatttgatgaagatatatttgaatgattgttg |
45295055 |
T |
|
| Q |
213 |
tccaattcctcccacttc |
230 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
45295054 |
tcaaattcctcccacttc |
45295037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 25626513 - 25626640
Alignment:
| Q |
3 |
tgcaccaccggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggcga |
102 |
Q |
| |
|
||||||||| | |||||||||| ||||| ||| || |||| |||| ||| |||| |||||| || || |||||| || ||||||||| |||||||||| |
|
|
| T |
25626513 |
tgcaccaccaggtaaatggatggccatgccagatatgggttttctcattgctcagaaatacaaccacgtcgttgttctaatatccattgcgaaagggcga |
25626612 |
T |
|
| Q |
103 |
tcgaaaacctttttccctctatgtggtg |
130 |
Q |
| |
|
|| |||||||||| |||||||| |||| |
|
|
| T |
25626613 |
tctgaaaccttttttcctctatggggtg |
25626640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 52969740 - 52969694
Alignment:
| Q |
3 |
tgcaccaccggataaatggatgatcatgctggatttgagtttcctca |
49 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
52969740 |
tgcaccacgggataaatggatgatcatgccggatatgagtttcctca |
52969694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 13069129 - 13069355
Alignment:
| Q |
3 |
tgcaccaccggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggcga |
102 |
Q |
| |
|
|||||||| ||||||||||||| ||||| |||| || || |||||| ||||||||||||||| || || |||||| ||||||||||||||||||||||| |
|
|
| T |
13069129 |
tgcaccacttgataaatggatgaccatgccggatatgggtgtcctcattgcacagagatacaatcacgtcgttgttctactatccattgagaaagggcga |
13069228 |
T |
|
| Q |
103 |
tcgaaaacctttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatatttga |
202 |
Q |
| |
|
| ||||||||||| |||||||| |||| |||| |||||| | | | ||||||| ||| |||||||||| || ||| |||| ||||| |||||||||| |
|
|
| T |
13069229 |
cctaaaaccttttttcctctatgcggtgaaccaccacatacatagcgcttgatgtgtatgccacatgtgaacgacaactatttcatgataatatatttga |
13069328 |
T |
|
| Q |
203 |
aggttggttgtccaattcctcccactt |
229 |
Q |
| |
|
|| |||||||| ||||||||||||| |
|
|
| T |
13069329 |
tggatggttgtcatattcctcccactt |
13069355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 4216085 - 4216209
Alignment:
| Q |
106 |
aaaacctttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatatttgaagg |
205 |
Q |
| |
|
|||||||||||||||||| |||| | ||| || ||||||||| |||| ||||| | |||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
4216085 |
aaaacctttttccctctacgtggcgaaccttcgcatagagaccgaataatgtgtctagcacatgtgaatgataaccattttatgatggtatatttgacgg |
4216184 |
T |
|
| Q |
206 |
ttggttgtccaattcctcccacttc |
230 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
4216185 |
atgattgtccaattcctcccacttc |
4216209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 203
Target Start/End: Complemental strand, 21883302 - 21883138
Alignment:
| Q |
41 |
gtttcctcaatgcacagagatacaaa-catgtggttgttatactatccattgagaaagggcgatcgaaaacctttttccctctatgtggtgcaccatcac |
139 |
Q |
| |
|
|||| |||| |||||| ||||| ||| ||||| || ||| |||||||||| || ||||||| ||||||||||||||||||| || | ||||||| |||| |
|
|
| T |
21883302 |
gttttctcattgcacatagatataaagcatgttgtggttctactatccatcgataaagggcaatcgaaaacctttttccctttacgcagtgcaccttcac |
21883203 |
T |
|
| Q |
140 |
atag-agactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatatttgaa |
203 |
Q |
| |
|
|||| | || |||||||||| | ||||||||||||| |||||| ||||||| |||||||||| |
|
|
| T |
21883202 |
atagaaaaccgaatgatgtgtctagcacatgtgaatgacaaccatattatgatagtatatttgaa |
21883138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 229
Target Start/End: Original strand, 31180395 - 31180517
Alignment:
| Q |
107 |
aaacctttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatatttgaaggt |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||| | |||| | || |||||||||| | | ||||||||||||||||||||||| || |||||| ||||| |
|
|
| T |
31180395 |
aaacctttttccctttatgtggtgcacctttgcatatataccgaatgatgtgtctagcgcatgtgaatgataaccattttattatggtatattagaagga |
31180494 |
T |
|
| Q |
207 |
tggttgtccaattcctcccactt |
229 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
31180495 |
tggttgtataattcctcccactt |
31180517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 3796961 - 3797085
Alignment:
| Q |
106 |
aaaacctttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatatttgaagg |
205 |
Q |
| |
|
||||||||||||| | || |||| |||| || ||||||||| |||| ||||| | |||||||||||| ||||||||||||||| ||||| ||| || |
|
|
| T |
3796961 |
aaaacctttttccttgtacgtggcacaccttcgcatagagaccgaataatgtgtctagcacatgtgaatggtaaccattttatgatggtatatatgacgg |
3797060 |
T |
|
| Q |
206 |
ttggttgtccaattcctcccacttc |
230 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
3797061 |
atgattgtccaattcctcccacttc |
3797085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 21880828 - 21880762
Alignment:
| Q |
164 |
cacatgtgaatgataaccattttatgattatatatttgaaggttggttgtccaattcctcccacttc |
230 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| || | || |||||||||| || ||||||| |
|
|
| T |
21880828 |
cacatgtgaatgacaaccattttatgataatatatttaaaagatgattgtccaattgctgccacttc |
21880762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 21545050 - 21545269
Alignment:
| Q |
13 |
gataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggcgatcgaaaacct |
112 |
Q |
| |
|
||||||||||||||||||| |||| |||| ||||||| ||||||||||||||||||||| || ||| || | ||||| || ||| | | ||| |||| || |
|
|
| T |
21545050 |
gataaatggatgatcatgccggatatgagattcctcattgcacagagatacaaacatgtagtggttctaatgtccatcgataaacgacaatcaaaaatct |
21545149 |
T |
|
| Q |
113 |
ttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatg--ataaccattttatgattatatatttgaaggttggt |
210 |
Q |
| |
|
||||||||||| | |||||| | || ||||||||| |||||||||| | |||||||||||| | |||||||||||||| |||||||||| || |||| |
|
|
| T |
21545150 |
ttttccctctacgcggtgcatcttcccatagagaccgaatgatgtgtctagcacatgtgaatgacaaaaccattttatgatgatatatttgatggatggt |
21545249 |
T |
|
| Q |
211 |
tgtccaattcctcccacttc |
230 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
21545250 |
tgtccatttcctcccacttc |
21545269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 12865080 - 12864949
Alignment:
| Q |
3 |
tgcaccaccggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggcga |
102 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||| |||||||||||| ||| ||| || ||| || ||||||| | | ||||||| |||||||||| |
|
|
| T |
12865080 |
tgcaccatcggataaatggatgaccatgtcggatatgagtttcctcatcgcatagaaattcaaccaaacggttgttgtgttttccattgggaaagggcga |
12864981 |
T |
|
| Q |
103 |
tcgaaaacctttttccctctatgtggtgcacc |
134 |
Q |
| |
|
||| |||||| |||||||||||||||| |||| |
|
|
| T |
12864980 |
tcggaaacctatttccctctatgtggtccacc |
12864949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 16765522 - 16765319
Alignment:
| Q |
1 |
cctgcaccaccggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggc |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| || |||| |||| |||||| |||||| || || |||||| |||| |||| | ||||||||| |
|
|
| T |
16765522 |
cctgcaccaccggataaatggatgaccatgc-agatatgggttttctcattgcacaataatacaaccacgtcgttgttctactgtccacttagaaagggc |
16765424 |
T |
|
| Q |
101 |
gatc-gaaaacctttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatatt |
199 |
Q |
| |
|
|||| |||| | ||||| |||||||| |||| ||| ||| | || || | ||||| |||||||||||||||| |||||||| ||||||||| ||| |
|
|
| T |
16765423 |
gatctgaaacctttttttcctctatggggtgaaccgccacttgttgagcgattaatgtgtttgacacatgtgaatgacaaccatttcatgattatacatt |
16765324 |
T |
|
| Q |
200 |
tgaag |
204 |
Q |
| |
|
|||| |
|
|
| T |
16765323 |
cgaag |
16765319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 5207017 - 5206955
Alignment:
| Q |
12 |
ggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggt |
74 |
Q |
| |
|
||||||||||||||||||| || || |||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
5207017 |
ggataaatggatgatcatgttgaatatgagtttcttcattgcacagagatacaagcatgtggt |
5206955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 7330151 - 7330203
Alignment:
| Q |
178 |
aaccattttatgattatatatttgaaggttggttgtccaattcctcccacttc |
230 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
7330151 |
aaccattttatgatgatatatttgaagaatggttgtccaattcctccaacttc |
7330203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 45907967 - 45907910
Alignment:
| Q |
167 |
atgtgaatgataaccattttatgattatatatttgaaggttggttgtccaattcctcc |
224 |
Q |
| |
|
|||||||||| |||||||||||| || | ||||||||| ||||||||| |||||||| |
|
|
| T |
45907967 |
atgtgaatgacaaccattttatggttgtggatttgaaggatggttgtccgattcctcc |
45907910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 50517893 - 50517970
Alignment:
| Q |
152 |
tgatgtgcatgacacatgtgaatgataaccattttatgattatatatttgaaggttggttgtccaattcctcccactt |
229 |
Q |
| |
|
||||||| ||||| |||||||||| |||||||||||| | | ||||||||| ||||||||| |||||||| |||| |
|
|
| T |
50517893 |
tgatgtgtttgacatatgtgaatgacaaccattttatggctttggatttgaaggatggttgtccgattcctcctactt |
50517970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 25368875 - 25368799
Alignment:
| Q |
7 |
ccaccggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatact |
83 |
Q |
| |
|
|||||| |||| |||||||||||| | || ||||||| |||| |||||||||||| || |||||||| ||| |||| |
|
|
| T |
25368875 |
ccaccgaataagtggatgatcatgtcgaatatgagttttctcattgcacagagatataagcatgtggtggttctact |
25368799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 19337168 - 19336942
Alignment:
| Q |
3 |
tgcaccaccggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggcga |
102 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| | |||||||||| |||||||||||||| ||| |||| ||| |||| |||| | ||||||| || |
|
|
| T |
19337168 |
tgcaccaccggataaatggatgaccatgccggatataagtttcctcattgcacagagatacacacagatggtggttctactgtccacagcgaaagggaga |
19337069 |
T |
|
| Q |
103 |
tcgaaaacctttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatatttga |
202 |
Q |
| |
|
|| |||||| |||||||||| |||||| |||||||||||||| | ||||||| || |||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
19337068 |
tcagaaacctacttccctctatccagtgcactatcacatagagactaattgatgtgtctggtacatgtgaatgacaaccattttatgataatatttttga |
19336969 |
T |
|
| Q |
203 |
aggttggttgtccaattcctcccactt |
229 |
Q |
| |
|
| | || |||||||||| ||||||||| |
|
|
| T |
19336968 |
atgatgattgtccaatttctcccactt |
19336942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 230
Target Start/End: Original strand, 42574737 - 42574911
Alignment:
| Q |
56 |
agagatacaaacatgtggttgttatactatccattgagaaagggcgatcgaaaacctttttccctctatgtggtgcaccatcacatagagactgaatgat |
155 |
Q |
| |
|
|||||||||||||| |||||||| ||| ||||| ||||| ||| ||||||||||||||||||||| ||| |||||||||||||||| | | ||||||| |
|
|
| T |
42574737 |
agagatacaaacatatggttgttcgactgtccatcgagaaggggtgatcgaaaacctttttccctcgatgcggtgcaccatcacatataaattgaatgac |
42574836 |
T |
|
| Q |
156 |
gtgcatgacacatgtgaatgataaccattttatgattatatatttgaaggttggttgtccaattcctcccacttc |
230 |
Q |
| |
|
||| | | | |||| ||| |||||||||||||| ||||| | |||| || |||||||||||||||||||| |
|
|
| T |
42574837 |
gtgtgtagcttacgtgagtgacaaccattttatgatggtatatctaaaggatgactgtccaattcctcccacttc |
42574911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 44712265 - 44712490
Alignment:
| Q |
3 |
tgcaccaccggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggcga |
102 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| || |||| |||| |||||||| |||||| | |||||| || |||||| | ||||||||| | |
|
|
| T |
44712265 |
tgcaccaccggataaatggatgaccatgatggatatgggttttctcattgcacagaaatacaacgacaccgttgttctattatccactaagaaagggcaa |
44712364 |
T |
|
| Q |
103 |
tcgaaaacctttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatatttga |
202 |
Q |
| |
|
| ||| ||||||| |||||| |||| ||| |||||| ||| || ||||||| ||| ||||||| ||||| |||||||| ||||| ||| |||||| |
|
|
| T |
44712365 |
tttgtaacatttttcc-tctatggggtgaaccgccacatacagagcgattgatgtgtatggcacatgtcaatgacaaccatttcatgataatacatttga |
44712463 |
T |
|
| Q |
203 |
aggttggttgtccaattcctcccactt |
229 |
Q |
| |
|
||| || |||||||||||||||||||| |
|
|
| T |
44712464 |
aggatgattgtccaattcctcccactt |
44712490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 229
Target Start/End: Complemental strand, 5236858 - 5236702
Alignment:
| Q |
73 |
gttgttatactatccattgagaaagggcgatcgaaaacctttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtga |
172 |
Q |
| |
|
|||||| ||||||||| | ||||||||| || |||||||||| ||||||| |||| |||| |||||| || || ||||||| ||| |||| |||| |
|
|
| T |
5236858 |
gttgttctactatccactaagaaagggcaatttgaaaccttttttcctctattgggtgaaccaccacatattgagcgattgatgtgtatggcacaagtga |
5236759 |
T |
|
| Q |
173 |
atgataaccattttatgattatatatttgaaggttggttgtccaattcctcccactt |
229 |
Q |
| |
|
|||| |||||||| ||||| ||| ||||||||| |||||||| ||||||||||||| |
|
|
| T |
5236758 |
atgacaaccatttcatgataatacatttgaaggatggttgtcttattcctcccactt |
5236702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 24578939 - 24578721
Alignment:
| Q |
7 |
ccaccggataaatggatgatcatgctggatttgagtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggcgatcga |
106 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||||||| ||||||||||||||| |||||||| ||| || | | ||| | ||||| ||| |
|
|
| T |
24578939 |
ccaccgaataaatggatgatcatgtcaaatatgagtttcctcactgcacagagatacaagcatgtggtggttctattgtacatcaaacaagggtaatcat |
24578840 |
T |
|
| Q |
107 |
aaacctttttccctctatgtggtgcaccatcacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatatttgaaggt |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||| | | || | ||||||||||||| | ||||||| | || || ||||||||||| ||||| |||| | |
|
|
| T |
24578839 |
aaacctttttccctatatgtggtgcacctttgcttataaactgaatgatgtgtttacgacatgtg-aggactacaattttatgattgtatatatgaatga |
24578741 |
T |
|
| Q |
207 |
tggttgtccaattcctccca |
226 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
24578740 |
tgattgtccaattcctccca |
24578721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 8039214 - 8039308
Alignment:
| Q |
136 |
tcacatagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatatttgaaggttggttgtccaattcctcccacttc |
230 |
Q |
| |
|
||||||||| | ||||||||||| | | ||| ||||||| || |||||||| || |||| |||||| | || ||||||||||||||||||||| |
|
|
| T |
8039214 |
tcacatagaaattgaatgatgtgtctagctcatttgaatgacaatcattttataatgatatctttgaaagatgattgtccaattcctcccacttc |
8039308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 41254403 - 41254341
Alignment:
| Q |
167 |
atgtgaatgataaccattttatgattatatatttgaaggttggttgtccaattcctcccactt |
229 |
Q |
| |
|
|||||||||| |||||||||||| | | ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
41254403 |
atgtgaatgacaaccattttatggctttggatttgaaggatggttgtccgattcctcccactt |
41254341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 205
Target Start/End: Original strand, 26547700 - 26547862
Alignment:
| Q |
41 |
gtttcctcaatgcacagagatacaaacatgtggttgttatactatccattgagaaagggcgatcgaaaacctttttccctctatgtggtgcaccatcaca |
140 |
Q |
| |
|
||||||||| |||| | |||||||| |||||||| ||| |||| ||||| || |||||| || | ||||||||| |||||| |||||||| ||||| |
|
|
| T |
26547700 |
gtttcctcattgcataaagatacaatcatgtggtggttttactgtccatcgaacaagggcaatgggaaacctttt--cctctacacggtgcaccttcaca |
26547797 |
T |
|
| Q |
141 |
tagagactgaatgatgtgcatgacacatgtgaatgataaccattttatgattatatatttgaagg |
205 |
Q |
| |
|
||||||| |||||||||| | |||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
26547798 |
tagagaccgaatgatgtgtctaacacatgtgaatgacaaccatttcatgatggtatatttgaagg |
26547862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 259960 - 259895
Alignment:
| Q |
165 |
acatgtgaatgataaccattttatgattatatatttgaaggttggttgtccaattcctcccacttc |
230 |
Q |
| |
|
|||||||||||| || |||||| |||| ||||||||||||| | ||||||||||||||| |||||| |
|
|
| T |
259960 |
acatgtgaatgaaaatcattttttgatgatatatttgaaggatagttgtccaattcctctcacttc |
259895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 260022 - 259954
Alignment:
| Q |
5 |
caccaccggataaatggatgatcatgctggatttgag-tttcctcaatgcacagagatacaaacatgtg |
72 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||||| | |||| ||| |||||| ||||||||||||||| |
|
|
| T |
260022 |
caccaccagataaatggatgattatgccggatttgggttttcttcattgcacatagatacaaacatgtg |
259954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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