View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9718_low_21 (Length: 250)

Name: NF9718_low_21
Description: NF9718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9718_low_21
NF9718_low_21
[»] chr3 (2 HSPs)
chr3 (9-250)||(223058-223300)
chr3 (14-51)||(22729954-22729991)
[»] chr4 (2 HSPs)
chr4 (15-131)||(29728744-29728862)
chr4 (16-54)||(38450695-38450733)
[»] chr7 (4 HSPs)
chr7 (15-125)||(32002087-32002199)
chr7 (15-53)||(46976970-46977008)
chr7 (14-47)||(41437124-41437157)
chr7 (15-47)||(33084987-33085019)
[»] chr8 (3 HSPs)
chr8 (17-131)||(26413398-26413513)
chr8 (14-51)||(5589561-5589598)
chr8 (16-57)||(36665306-36665347)
[»] chr2 (4 HSPs)
chr2 (17-125)||(16452169-16452277)
chr2 (15-47)||(10429915-10429947)
chr2 (15-47)||(26849278-26849310)
chr2 (15-47)||(36959382-36959414)
[»] chr1 (2 HSPs)
chr1 (15-79)||(11098944-11099008)
chr1 (19-67)||(43965071-43965119)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 223058 - 223300
Alignment:
Q  9 agcaaagggggttggatagctcaactggtttgagctaagagttaagtagtcggaagtctaggattcaagtcctcacaaggaaataaaaaac---acacaa 105  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    ||||||    
T  223058 agcaaggggggttggatagctcaactggtttgagctaagagttaagtagtcggaagcctaggattcaagtcctcacaaggaaataaaaaaactaacacaa 223157  T
Q  106 caattaacatactaacatttatcattnnnnnnntgtcaaaatcaatttcacatctctcttgaataaattttgccacatccaaaactgaaccaaacataaa 205  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||    
T  223158 caattaacatactaacatttatcattaaaaaaatgtcaaaatcaatttcacatctcta--gaataaattttgccacatccaaaactaaaccaaacataaa 223255  T
Q  206 ctaaactaaactcacaataaaagtttcaaaatcaatttttacaac 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  223256 ctaaactaaactcacaataaaagtttcaaaatcaatttttacaac 223300  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 22729991 - 22729954
Alignment:
Q  14 agggggttggatagctcaactggtttgagctaagagtt 51  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  22729991 agggggttgggtagctcaactggttcgagctaagagtt 22729954  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 29728862 - 29728744
Alignment:
Q  15 gggggttggatagctcaactggtttgagctaagagttaagtagtcggaagtctaggattcaagtcctcacaaggaaataaaaaac--acacaacaattaa 112  Q
    ||||||||| ||||||||||||||||||||||| |||||| ||| |||  |  ||| ||||||||||   ||||| | |||||||  ||| |||||||||    
T  29728862 gggggttgggtagctcaactggtttgagctaagggttaaggagttggagattcagggttcaagtcctattaaggagaaaaaaaactaacataacaattaa 29728763  T
Q  113 catactaacatttatcatt 131  Q
    |||||||||| || |||||    
T  29728762 catactaacacttgtcatt 29728744  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 38450695 - 38450733
Alignment:
Q  16 ggggttggatagctcaactggtttgagctaagagttaag 54  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  38450695 ggggttgggtagctcaactggtttgagctaagggttaag 38450733  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 32002199 - 32002087
Alignment:
Q  15 gggggttggatagctcaactggtttgagctaagagttaagtagtcggaagtctaggattcaagtcctcacaaggaaataaaaaac--acacaacaattaa 112  Q
    ||||||||| ||||||||||||||||||||||| ||||||  || ||  ||| ||| || |||||||  |||||| | ||| |||  ||| |||||||||    
T  32002199 gggggttggttagctcaactggtttgagctaagggttaaggtgttggcggtcaagggtttaagtcctggcaaggagaaaaagaactaacataacaattaa 32002100  T
Q  113 catactaacattt 125  Q
    |||||||||||||    
T  32002099 catactaacattt 32002087  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 46977008 - 46976970
Alignment:
Q  15 gggggttggatagctcaactggtttgagctaagagttaa 53  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  46977008 gggggttgggtagctcaactggtttgagctaagggttaa 46976970  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 41437124 - 41437157
Alignment:
Q  14 agggggttggatagctcaactggtttgagctaag 47  Q
    |||||||||| |||||||||||||||||||||||    
T  41437124 agggggttgggtagctcaactggtttgagctaag 41437157  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 33085019 - 33084987
Alignment:
Q  15 gggggttggatagctcaactggtttgagctaag 47  Q
    ||||||||| |||||||||||||||||||||||    
T  33085019 gggggttgggtagctcaactggtttgagctaag 33084987  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 26413513 - 26413398
Alignment:
Q  17 gggttggatagctcaactggtttgagctaagagttaagtagtcggaagtctaggattcaagtcctcacaaggaaataaaaaac--acacaacaattaaca 114  Q
    ||||||| |||||||||||||||||| |||||||| |  ||| ||| ||| |||||||||||| |   ||||| | ||||| |  ||| |||||||||||    
T  26413513 gggttgggtagctcaactggtttgaggtaagagttcatgagttggatgtccaggattcaagtcttggaaaggaga-aaaaagctaacataacaattaaca 26413415  T
Q  115 tactaacatttatcatt 131  Q
    ||||||||||| |||||    
T  26413414 tactaacatttgtcatt 26413398  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 5589561 - 5589598
Alignment:
Q  14 agggggttggatagctcaactggtttgagctaagagtt 51  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  5589561 agggggttgggtagctcaactggttcgagctaagagtt 5589598  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 36665347 - 36665306
Alignment:
Q  16 ggggttggatagctcaactggtttgagctaagagttaagtag 57  Q
    |||||||| ||||| ||||||||||||||||| |||||||||    
T  36665347 ggggttgggtagcttaactggtttgagctaagggttaagtag 36665306  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 16452277 - 16452169
Alignment:
Q  17 gggttggatagctcaactggtttgagctaagagttaagtagtcggaagtctaggattcaagtcctcacaaggaaataaaaaacacacaacaattaacata 116  Q
    ||||||| ||||||||||||||||||||||| ||| |  ||| ||| |||| || ||||||||||  |||||| | ||||   ||  ||||| |||||||    
T  16452277 gggttgggtagctcaactggtttgagctaagggttcaaaagttggaggtcttgggttcaagtcctagcaaggagaaaaaactaacgtaacaaataacata 16452178  T
Q  117 ctaacattt 125  Q
    |||||||||    
T  16452177 ctaacattt 16452169  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 10429947 - 10429915
Alignment:
Q  15 gggggttggatagctcaactggtttgagctaag 47  Q
    ||||||||| |||||||||||||||||||||||    
T  10429947 gggggttgggtagctcaactggtttgagctaag 10429915  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 26849310 - 26849278
Alignment:
Q  15 gggggttggatagctcaactggtttgagctaag 47  Q
    ||||||||| |||||||||||||||||||||||    
T  26849310 gggggttgggtagctcaactggtttgagctaag 26849278  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 36959382 - 36959414
Alignment:
Q  15 gggggttggatagctcaactggtttgagctaag 47  Q
    ||||||||| |||||||||||||||||||||||    
T  36959382 gggggttgggtagctcaactggtttgagctaag 36959414  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 11098944 - 11099008
Alignment:
Q  15 gggggttggatagctcaactggtttgagctaagagttaagtagtcggaagtctaggattcaagtc 79  Q
    ||||||||| ||||||| | ||||||||||||| |||||| ||| ||||||| ||| | ||||||    
T  11098944 gggggttgggtagctcagcaggtttgagctaagggttaaggagttggaagtccagggtccaagtc 11099008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 43965071 - 43965119
Alignment:
Q  19 gttggatagctcaactggtttgagctaagagttaagtagtcggaagtct 67  Q
    ||||| |||||||| |||||||||||||||| |||| ||| ||||||||    
T  43965071 gttgggtagctcaattggtttgagctaagagataagaagttggaagtct 43965119  T

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