View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9718_low_23 (Length: 238)

Name: NF9718_low_23
Description: NF9718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9718_low_23
NF9718_low_23
[»] chr2 (5 HSPs)
chr2 (2-223)||(31483957-31484178)
chr2 (51-140)||(10926907-10926996)
chr2 (70-184)||(21198542-21198656)
chr2 (53-108)||(27546661-27546716)
chr2 (112-174)||(30214658-30214720)
[»] chr7 (4 HSPs)
chr7 (70-188)||(19337255-19337373)
chr7 (70-188)||(44712060-44712178)
chr7 (82-188)||(22623711-22623817)
chr7 (112-174)||(41254692-41254754)
[»] chr3 (3 HSPs)
chr3 (51-219)||(25478049-25478209)
chr3 (112-175)||(52969869-52969932)
chr3 (112-174)||(6157396-6157458)
[»] chr8 (1 HSPs)
chr8 (51-188)||(26674557-26674694)
[»] scaffold0008 (1 HSPs)
scaffold0008 (2-188)||(260043-260229)
[»] chr1 (1 HSPs)
chr1 (70-188)||(21544835-21544953)
[»] chr5 (4 HSPs)
chr5 (114-175)||(23350874-23350935)
chr5 (2-145)||(31043191-31043334)
chr5 (112-175)||(34828052-34828115)
chr5 (112-165)||(20234040-20234093)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 31484178 - 31483957
Alignment:
Q  2 gttagagctcataagacctgtttatattgcatatccggccaaattaattgtcgatagcgctcaatttattcaccgataagctctttatgaagttggtaat 101  Q
    |||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31484178 gttagagctcataagacctgtttatattgcatatccggcctaatcaactgtcgatagcgctcaatttcttcaccgataagctctttatgaagttggtaat 31484079  T
Q  102 agatcatccggtgatcatcaacaatcaagttacgtaggcccgcatctacacggaacccataatgactatcaccaactacatccaccagaccaccaccttt 201  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31484078 agatcatctggtgatcatcaacaatcaagttacgtaggcccgcaactacacggaacccagaatgactatcaccaactacatccaccagaccaccaccttt 31483979  T
Q  202 tcaataaattcatgcatgaaag 223  Q
    ||||||||||||||||| ||||    
T  31483978 tcaataaattcatgcattaaag 31483957  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 10926996 - 10926907
Alignment:
Q  51 gtcgatagcgctcaatttattcaccgataagctctttatgaagttggtaatagatcatccggtgatcatcaacaatcaagttacgtaggc 140  Q
    ||||||||||| || ||| ||||| |||||||||||| ||||||||||||  ||||||  ||||||||||||||| || || ||||||||    
T  10926996 gtcgatagcgcacattttcttcactgataagctctttgtgaagttggtaaaggatcatttggtgatcatcaacaaacatgtcacgtaggc 10926907  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 184
Target Start/End: Original strand, 21198542 - 21198656
Alignment:
Q  70 ttcaccgataagctctttatgaagttggtaatagatcatccggtgatcatcaacaatcaagttacgtaggcccgcatctacacggaacccataatgacta 169  Q
    |||||||||||||||||| |||||||||||| |||||||  | | ||||||||||   | || ||| ||||| ||| || || | |||||| |||||| |    
T  21198542 ttcaccgataagctctttttgaagttggtaacagatcattagctaatcatcaacatatatgtcacgcaggcctgcaactgcatgaaacccagaatgacca 21198641  T
Q  170 tcaccaactacatcc 184  Q
    |||||||||||||||    
T  21198642 tcaccaactacatcc 21198656  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 27546716 - 27546661
Alignment:
Q  53 cgatagcgctcaatttattcaccgataagctctttatgaagttggtaatagatcat 108  Q
    ||||| || ||| ||| |||||||||||||||||| ||||||||||||||||||||    
T  27546716 cgataacgttcagtttcttcaccgataagctctttttgaagttggtaatagatcat 27546661  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 30214720 - 30214658
Alignment:
Q  112 gtgatcatcaacaatcaagttacgtaggcccgcatctacacggaacccataatgactatcacc 174  Q
    ||||||||||||| |||||||||||||| ||||| |||| | ||||||| |||| ||||||||    
T  30214720 gtgatcatcaacagtcaagttacgtaggaccgcaactactcagaacccacaatggctatcacc 30214658  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 19337255 - 19337373
Alignment:
Q  70 ttcaccgataagctctttatgaagttggtaatagatcatccggtgatcatcaacaatcaagttacgtaggcccgcatctacacggaacccataatgacta 169  Q
    |||||| ||||||| ||| |||||||||||| | |||||| ||||||||||||||| || ||||||||||||| || || ||||||||||| |||||| |    
T  19337255 ttcaccaataagctatttgtgaagttggtaacatatcatctggtgatcatcaacaaacatgttacgtaggcccacaactgcacggaacccacaatgacca 19337354  T
Q  170 tcaccaactacatccacca 188  Q
    |||||  ||||||| ||||    
T  19337355 tcacctgctacatctacca 19337373  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 188
Target Start/End: Complemental strand, 44712178 - 44712060
Alignment:
Q  70 ttcaccgataagctctttatgaagttggtaatagatcatccggtgatcatcaacaatcaagttacgtaggcccgcatctacacggaacccataatgacta 169  Q
    ||||||| | |||||||| || || |||||| |||||||  ||||||| |||||| ||||| ||||||| |||||| |  ||||||||||| || ||| |    
T  44712178 ttcaccggttagctctttgtgcaggtggtaacagatcatttggtgatcgtcaacactcaagctacgtagacccgcaaccgcacggaacccacaaagacca 44712079  T
Q  170 tcaccaactacatccacca 188  Q
    ||| || ||||||||||||    
T  44712078 tcatcagctacatccacca 44712060  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 22623817 - 22623711
Alignment:
Q  82 ctctttatgaagttggtaatagatcatccggtgatcatcaacaatcaagttacgtaggcccgcatctacacggaacccataatgactatcaccaactaca 181  Q
    |||||| || || |||||| |||||||  ||||||| |||| | ||||||||||||| || ||| || ||||||||||| || ||| ||||||| | ||     
T  22623817 ctctttgtgcagctggtaacagatcatttggtgatcgtcaagactcaagttacgtagacctgcaactgcacggaacccacaacgaccatcaccagcaact 22623718  T
Q  182 tccacca 188  Q
    |||||||    
T  22623717 tccacca 22623711  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 41254692 - 41254754
Alignment:
Q  112 gtgatcatcaacaatcaagttacgtaggcccgcatctacacggaacccataatgactatcacc 174  Q
    ||||||||||||| |||||||||||||| ||||| || | ||||||||| |||| | ||||||    
T  41254692 gtgatcatcaacagtcaagttacgtaggaccgcaactgctcggaacccacaatggccatcacc 41254754  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 219
Target Start/End: Original strand, 25478049 - 25478209
Alignment:
Q  51 gtcgatagcgctcaatttattcaccgataagctctttatgaagttggtaatagatcatccggtgatcatcaacaatcaagttacgtaggcccgcatctac 150  Q
    ||||||||||  || ||| |||||||||||||||||| || ||||||||| | |||||  ||||||| |||| | |||||||| |||| ||||||  | |    
T  25478049 gtcgatagcgagcattttcttcaccgataagctctttgtgcagttggtaacaaatcatttggtgatcgtcaaaactcaagttatgtagacccgcaattgc 25478148  T
Q  151 acggaacccataatgactatcaccaactacatccaccagaccaccaccttttcaataaattcatgcatg 219  Q
    ||||||||||||||||| ||||| |  |||||        |||||||||||||||||||||||||||||    
T  25478149 acggaacccataatgaccatcacaagttacat--------ccaccaccttttcaataaattcatgcatg 25478209  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 52969869 - 52969932
Alignment:
Q  112 gtgatcatcaacaatcaagttacgtaggcccgcatctacacggaacccataatgactatcacca 175  Q
    ||||||||||||| |||||||||||||| ||||| || | ||||||||| |||| | |||||||    
T  52969869 gtgatcatcaacattcaagttacgtaggaccgcaactgctcggaacccacaatggccatcacca 52969932  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 6157396 - 6157458
Alignment:
Q  112 gtgatcatcaacaatcaagttacgtaggcccgcatctacacggaacccataatgactatcacc 174  Q
    ||||||||||||||| |||||||||||| ||||| || | ||||||||| |||| | ||||||    
T  6157396 gtgatcatcaacaattaagttacgtaggaccgcaacttctcggaacccacaatggccatcacc 6157458  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 51 - 188
Target Start/End: Original strand, 26674557 - 26674694
Alignment:
Q  51 gtcgatagcgctcaatttattcaccgataagctctttatgaagttggtaatagatcatccggtgatcatcaacaatcaagttacgtaggcccgcatctac 150  Q
    ||||||| ||| || ||| |||||||||||||||||| ||||| |||||| |||||||| |||||| ||||| | || ||||| ||||||||||| || |    
T  26674557 gtcgataacgcgcattttcttcaccgataagctctttgtgaagctggtaacagatcatctggtgataatcaatagtctagttatgtaggcccgcaactgc 26674656  T
Q  151 acggaacccataatgactatcaccaactacatccacca 188  Q
    ||  |||||| |||| | |||||||  |||||||||||    
T  26674657 acaaaacccacaatggccatcaccaggtacatccacca 26674694  T

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Target: scaffold0008 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 260043 - 260229
Alignment:
Q  2 gttagagctcataagacctgtttatattgcatatccggccaaattaattgtcgatagcgctcaatttattcaccgataagctctttatgaagttggtaat 101  Q
    |||||||| | ||||||  ||||||||||| |||| | || ||| || ||  |||| |||||| ||| |||| |||||| |||||| ||||| ||||||     
T  260043 gttagagcacctaagactagtttatattgcctatctgacccaataaagtgctgataacgctcattttcttcatcgataaactctttttgaaggtggtaac 260142  T
Q  102 agatcatccggtgatcatcaacaatcaagttacgtaggcccgcatctacacggaacccataatgactatcaccaactacatccacca 188  Q
    ||||||||| ||||||||||  |  || ||||| |||||   || || ||||||||||| |||||| ||||||| ||||||||||||    
T  260143 agatcatccagtgatcatcatgagacatgttacataggcgatcaactgcacggaacccacaatgaccatcaccagctacatccacca 260229  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 188
Target Start/End: Complemental strand, 21544953 - 21544835
Alignment:
Q  70 ttcaccgataagctctttatgaagttggtaatagatcatccggtgatcatcaacaatcaagttacgtaggcccgcatctacacggaacccataatgacta 169  Q
    ||||||| ||||||||||  ||||||| |||||||| ||| | | ||||||||||  || ||||||||||||| || || |||| || | | |||| | |    
T  21544953 ttcaccgttaagctcttttagaagttgataatagataatctgataatcatcaacatacatgttacgtaggcccacaactgcacgaaatctacaatggcca 21544854  T
Q  170 tcaccaactacatccacca 188  Q
    |||||| ||||||||||||    
T  21544853 tcaccagctacatccacca 21544835  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 23350874 - 23350935
Alignment:
Q  114 gatcatcaacaatcaagttacgtaggcccgcatctacacggaacccataatgactatcacca 175  Q
    |||||||||||||||||||||||||| ||||| || | ||||||||| |||| | |||||||    
T  23350874 gatcatcaacaatcaagttacgtaggaccgcaactgctcggaacccacaatggccatcacca 23350935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 145
Target Start/End: Original strand, 31043191 - 31043334
Alignment:
Q  2 gttagagctcataagacctgtttatattgcatatccggccaaattaattgtcgatagcgctcaatttattcaccgataagctctttatgaagttggtaat 101  Q
    |||||||| | |||||||||||||||| || ||||    ||||| |  |||||||||| | || ||| |||| |||||| |||||| ||||||||||||     
T  31043191 gttagagcgcctaagacctgtttatatcgcctatctacacaaatcatctgtcgatagcacgcattttcttcatcgataaactctttgtgaagttggtaac 31043290  T
Q  102 agatcatccggtgatcatcaacaatcaagttacgtaggcccgca 145  Q
    |||||| | || || ||||||||  || || ||||||| |||||    
T  31043291 agatcaactggcgagcatcaacatacatgtcacgtaggtccgca 31043334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 34828052 - 34828115
Alignment:
Q  112 gtgatcatcaacaatcaagttacgtaggcccgcatctacacggaacccataatgactatcacca 175  Q
    ||||||||||||| |||||||||||||| ||||| || | ||||||||| |||| | |||||||    
T  34828052 gtgatcatcaacattcaagttacgtaggaccgcaactgctcggaacccacaatggccatcacca 34828115  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 20234040 - 20234093
Alignment:
Q  112 gtgatcatcaacaatcaagttacgtaggcccgcatctacacggaacccataatg 165  Q
    ||||||||||||| |||||||||||||| | ||| || | ||||||||||||||    
T  20234040 gtgatcatcaacagtcaagttacgtaggactgcaactgctcggaacccataatg 20234093  T

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