View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9718_low_4 (Length: 434)
Name: NF9718_low_4
Description: NF9718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9718_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 420
Target Start/End: Original strand, 33520115 - 33520522
Alignment:
| Q |
11 |
caaagggcatggagaatattgtaggctacataaagataaaatatcataacatgcccatgtatattacagaaaatggtgcgtgaatactcaataacattat |
110 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33520115 |
caaagggcatggagaagattgtagactacataaagataaaatatcataacatgcccatgtatattacagaaaatggtgcgtgaatactcaataacattat |
33520214 |
T |
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| Q |
111 |
atgatctcattannnnnnnnnatatgtttttgcttgatcacttgtgtgatatcaaacacttcaatatgaattaagagataaagaaaggagtgactatttg |
210 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33520215 |
atgatctcatt--ttttttttatatgtttttgcttgatcacttgtgtgatatcaaacacttcaatatgaattaagagataaagaaaggagtgactatttg |
33520312 |
T |
|
| Q |
211 |
aaggtagttttttggtatgtaaatttgggctggagttatgaattggttaatatatcatggatgactgctcaaaatttgttgcaggatattcttcgccact |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33520313 |
aaggtagttttttggtatgtaaatttgggctggagttatgaattggttaatatatcatggatgactgctcaaaatttgttgcaggatattcttcgccact |
33520412 |
T |
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| Q |
311 |
caacgcaggcatgacaatgaatgatttactacatgatttcaaacggatagagtatcataaagcttaccttgcagctttgcttagagccatgaggtgagtg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33520413 |
caacgcaggcatgacaatgaatgatttactacatgatttcaaacggatagagtatcataaagcttaccttgcagctttgcttagagccatgaggtgagtg |
33520512 |
T |
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| Q |
411 |
atgatgaaaa |
420 |
Q |
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|||||||||| |
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| T |
33520513 |
atgatgaaaa |
33520522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 418
Target Start/End: Complemental strand, 33495940 - 33495534
Alignment:
| Q |
11 |
caaagggcatggagaatattgtaggctacataaagataaaatatcataacatgcccatgtatattacagaaaatggtgcgtgaatactcaataacattat |
110 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33495940 |
caaagggcatggagaagattgtagactacataaagataaaataccaaaacctgcccatgtatattacagaaaatggtgtgtgaatactcaataacattat |
33495841 |
T |
|
| Q |
111 |
atgatctcattannnnnnnnnatatgtttttgcttgatcacttgtgtgatatcaaacacttcaatatgaattaagagataaagaaaggagtgactatttg |
210 |
Q |
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||||||||||| |||||||||||||||||||||||| | ||||||||||||| |||||| |||| |||| |||||||||||||||| |||| |
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| T |
33495840 |
atgatctcatt--ttctttttatatgtttttgcttgatcacttgtttaatatcaaacactttaatatgcattatgagacaaagaaaggagtgactctttg |
33495743 |
T |
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| Q |
211 |
aaggtagttttttggtatgtaaatttgggc-tggagttatgaattggttaatatatcatggatgactgctcaaaatttgttgcaggatattcttcgccac |
309 |
Q |
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||||| |||||||| |||||||||||||| |||| | ||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||| |
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| T |
33495742 |
aaggtggttttttgttatgtaaatttgggtatggaagtttgaattggttaatatatgatggatggctatacaaaatttgttgcaggatattcttcgccac |
33495643 |
T |
|
| Q |
310 |
tcaacgcaggcatgacaatgaatgatttactacatgatttcaaacggatagagtatcataaagcttaccttgcagctttgcttagagccatgaggtgagt |
409 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33495642 |
tcaacgcaagcatgacaatgcatgatttactacatgatttcaaacggatagagtatcataaagcttaccttgcagctttgcttagagccataaggtgagt |
33495543 |
T |
|
| Q |
410 |
gatgatgaa |
418 |
Q |
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||||||||| |
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| T |
33495542 |
gatgatgaa |
33495534 |
T |
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