View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9718_low_5 (Length: 427)
Name: NF9718_low_5
Description: NF9718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9718_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 5 - 412
Target Start/End: Original strand, 10477460 - 10477867
Alignment:
| Q |
5 |
gaggagcagagatcgcagaatgatgatagcaactcaacttcatgttcaacnnnnnnnggtttgatagattttttcatatattcaacattattcatcagaa |
104 |
Q |
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|||||| ||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10477460 |
gaggagaagacatcacagaatgatgatagcaactcaacttcatgttcaactttttttggtttgatagattttttcatatattcaacattattcatcagaa |
10477559 |
T |
|
| Q |
105 |
tacaaaagnnnnnnnnnnnnnnnnnnnnnnnccttctctgccaacttcgttccggtgactacaaagtaaagggagagaagcaggtattagaaactgaatc |
204 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10477560 |
tacaaaagtttttttcaactttttggtttttccttctctgccaacttcgttccggtgactacgaagtaaagggagagaagcaggtattagaaactgaatc |
10477659 |
T |
|
| Q |
205 |
aaatgttagcagagaaagtggagagattaagagggatgaagttgaaacggtgatggcgaaaatgggaattttttgcagctcagaaagtgatgaacttgat |
304 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10477660 |
aaatgttagcagagaaagtggagagattaagagggttgaagttgaaacggtgatggcgaaaatgggaattttttgcagctcagaaagtgatgaacttgat |
10477759 |
T |
|
| Q |
305 |
gaaaaatatggttcaaatgaactttctgaattgtttgatgagaatgagccaagtttggaggaagtgaagatggcttttgacgtttttgatgagaacaaag |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10477760 |
gaaaaatatggttcaaatgaactttctgaattgtttgatgagaatgagccaagtttggaggaagtgaagatggcttttgacgtttttgatgagaacaaag |
10477859 |
T |
|
| Q |
405 |
atggattt |
412 |
Q |
| |
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|||||||| |
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| T |
10477860 |
atggattt |
10477867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 206 - 408
Target Start/End: Original strand, 2855742 - 2855944
Alignment:
| Q |
206 |
aatgttagcagagaaagtggagagattaagagggatgaagttgaaacggtgatggcgaaaatgggaattttttgcagctcagaaagtgatgaacttgatg |
305 |
Q |
| |
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||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | |
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| T |
2855742 |
aatgtaagcggagaaagtggagagattaagaggaatgaagttgaaacggtgatggcgaatatgggacttttttgcagctcagaaagtgatgaacttgaag |
2855841 |
T |
|
| Q |
306 |
aaaaatatggttcaaatgaactttctgaattgtttgatgagaatgagccaagtttggaggaagtgaagatggcttttgacgtttttgatgagaacaaaga |
405 |
Q |
| |
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|||||||| |||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2855842 |
aaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagccaagtttggaggaagtgaagatggcttttgatgtttttgatgagaacaaaga |
2855941 |
T |
|
| Q |
406 |
tgg |
408 |
Q |
| |
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||| |
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|
| T |
2855942 |
tgg |
2855944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 230 - 384
Target Start/End: Original strand, 2851669 - 2851823
Alignment:
| Q |
230 |
attaagagggatgaagttgaaacggtgatggcgaaaatgggaattttttgcagctcagaaagtgatgaacttgatgaaaaatatggttcaaatgaacttt |
329 |
Q |
| |
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||||||||||||||||| |||| || |||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| || ||| |
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| T |
2851669 |
attaagagggatgaagtgaaaactgtaatggtgaaaatgggaaacttttgtagctcagaaagtgatgaacttgaagaaaaatatggttcaaaggagcttc |
2851768 |
T |
|
| Q |
330 |
ctgaattgtttgatgagaatgagccaagtttggaggaagtgaagatggcttttga |
384 |
Q |
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||||||||||||||||||||| ||| |||| ||||||||||||||| ||||||| |
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| T |
2851769 |
ttgaattgtttgatgagaatgaaccatgtttagaggaagtgaagatgacttttga |
2851823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 2855654 - 2855721
Alignment:
| Q |
136 |
ccttctctgccaacttcgttccggtgactacaaagtaaagggagagaagcaggtattagaaactgaat |
203 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||||| | |||||| ||| ||||||||||| |
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| T |
2855654 |
ccttttctgccaacttcgttccggtgacttagaagtaaagggaaaaaagcagttatcagaaactgaat |
2855721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 217 - 408
Target Start/End: Original strand, 8216042 - 8216233
Alignment:
| Q |
217 |
agaaagtggagagattaagagggatgaagttgaaacggtgatggcgaaaatgggaattttttgcagctcagaaagtgatgaacttgatgaaaaatatggt |
316 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||| ||||||||| || |
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| T |
8216042 |
agaaagtggagagattaagaggaatgaagttgaaacggtgatggcgaatatgggacttttttgcagcttagaaagtgatgaacttgaagaaaaatatagt |
8216141 |
T |
|
| Q |
317 |
tcaaatgaactttctgaattgtttgatgagaatgagccaagtttggaggaagtgaagatggcttttgacgtttttgatgagaacaaagatgg |
408 |
Q |
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|| || || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
8216142 |
tcgaaggagttttctgaattgtttgatgagaatgagccaagtttggaggaagtttagatggcttttgatgtttttgatgagaacaaagatgg |
8216233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 239 - 408
Target Start/End: Complemental strand, 52971406 - 52971237
Alignment:
| Q |
239 |
gatgaagttgaaacggtgatggcgaaaatgggaattttttgcagctcagaaagtgatgaacttgatgaaaaatatggttcaaatgaactttctgaattgt |
338 |
Q |
| |
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|||||||| ||| |||||||| ||||||||| ||||||||||||||||||| || |||||||| ||||| |||||||| || || |||| |||| ||| |
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| T |
52971406 |
gatgaagtgaaaatggtgatggaaaaaatgggatttttttgcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgt |
52971307 |
T |
|
| Q |
339 |
ttgatgagaatgagccaagtttggaggaagtgaagatggcttttgacgtttttgatgagaacaaagatgg |
408 |
Q |
| |
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|||| ||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||| |
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| T |
52971306 |
ttgaagagaatgagcctagtttggaggagttgaagcaagcttttgatgtttttgatgagaacaaagatgg |
52971237 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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