View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9718_low_9 (Length: 406)
Name: NF9718_low_9
Description: NF9718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9718_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 6 - 390
Target Start/End: Complemental strand, 56279171 - 56278789
Alignment:
| Q |
6 |
aggagcagagacagcatagataatagaaaccaa--gtacaactgatttatgtatgttgaagggatgcgcataaaattattatgtgctggtcttggattca |
103 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56279171 |
aggaccagacacagcatagataatagaaaccaattgtacaactgatttatgt----tgaagggatgcgcataaaattattatgtgctggtcttggattca |
56279076 |
T |
|
| Q |
104 |
ataagatggatgtgccaattatactgctgaatcattttgcattatggcagagttatgatcagttcagtagttatgttgggtgagatggatgtaggcgttg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56279075 |
ataagatggatgtgccaattatactgctgaatcattttgcattatggcagagttatgatcagttcagtagttatgttgggtgagatggatgtaggcgttg |
56278976 |
T |
|
| Q |
204 |
cagggagctattttaattgtatactggaataggccaatgcacagggttggtagaattgggtgagatactttagtgtcatgtaatgtgactattcttgatg |
303 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56278975 |
cagggagctattttaattgtatattggaataggccaatgcacagggttggtagaattgggtgagatactttagtgtcatgtaatgtgactattcttgatg |
56278876 |
T |
|
| Q |
304 |
taaaccaatatcacatatatagcatgtgttgtgcttgtgagaactaactgttttagaagtcctagaacactccttagtccttctttt |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56278875 |
taaaccaatatcacatatatagcatgtgttgtgcttgtgagaactaactgttttagaagtcctagaacactccttagtccttctttt |
56278789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 115 - 319
Target Start/End: Complemental strand, 46571709 - 46571485
Alignment:
| Q |
115 |
gtgccaattatactgctgaatcattttgcattatggcagagttatgat--cagt----tcagt-agttatgttgggtgagatggatgtaggcgttgcagg |
207 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||| |||| |||| | ||| || |||||||||||||||||||||||| ||||||| |
|
|
| T |
46571709 |
gtgccaattatagtgctgaatcattttgcattatggctaagttgtgatgtcagtagtttgagtgagcaatgttgggtgagatggatgtaggcattgcagg |
46571610 |
T |
|
| Q |
208 |
gagctattttaattgtatac-------------tggaataggccaatgcacagggttggtagaattgggtgagatactttagtgtcatgtaatgtgacta |
294 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46571609 |
gagctattctaattgtatttgggtgctgtcttttggaattggccaatgcacggggctggtagaatttggtgagatactttagtgtcatgtaatgtgacta |
46571510 |
T |
|
| Q |
295 |
ttcttgatgtaaaccaatatcacat |
319 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
46571509 |
ttcttgatgtaaaccaatatcacat |
46571485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University