View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_high_1 (Length: 595)
Name: NF9719_high_1
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 134 - 577
Target Start/End: Original strand, 36808811 - 36809246
Alignment:
| Q |
134 |
tgaaagatcgcatttgaatggttattttgggatgaaagttgattgagaatcaaaatggctatggctagatgtatgatattgtggttgcttcaaatatgct |
233 |
Q |
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| T |
36808811 |
tgaaagatcgcatttgaatggttattttgggatgaaagttgattgagaatcaaaatggctatggctagatgtatgatattgtggttgcttcaaatatgct |
36808910 |
T |
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| Q |
234 |
ggtctgattactgagtatacaacacttggattaatatttcaggatatgattgagtattttttggttggtcattggtgtacacttaaactttgggatgttc |
333 |
Q |
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| T |
36808911 |
ggtctgattaccgagtatacaacacttggattaatatttcaggatatgattgagtattttttggttggtcattggtgtac--ttaaactttgggatgttc |
36809008 |
T |
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| Q |
334 |
ctagtatagcttgttttagctcttgaactgatgtatgttgtttgtcttagactcttagctctagctggtgtgatgtgcatatatggagagttactttacc |
433 |
Q |
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| T |
36809009 |
ctagta--gcttgttttagctcttgaactgatgtatgttgtttgtcttagactcttagctctagctggtgtgatgtgcatatatggagagttactttacc |
36809106 |
T |
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| Q |
434 |
gaactctttatcattaagagttgtagtattcattatgattctaacacttattttaaagaaaatagaaacatctgaattgatgagtgaatcaagtgtcatt |
533 |
Q |
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| T |
36809107 |
caactttttatcattaagagttgtagtattcattatgattctaacacttattttaaagaaaatagaaacatctgaattgatgagtgaatcaagtgtcatt |
36809206 |
T |
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| Q |
534 |
tgtggtggaaaatcataatgacgtacgtatggttgtgtcatact |
577 |
Q |
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| T |
36809207 |
tgtggtggaaaatcataatg----acgtatggttgtgtcatact |
36809246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 36808655 - 36808790
Alignment:
| Q |
1 |
tggtgatttgagaaattttatttactttaaaatatttgtatagctgttccttataattttttaagtacgatgacatgaggtattatcgagaaatttatta |
100 |
Q |
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| T |
36808655 |
tggtgatttgagaaattttatttactttaaaatatttgtatagttgttccttataatttttgaagtaagttgacatgaggtattatcgagaaatttatta |
36808754 |
T |
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| Q |
101 |
aatgaaaatgtttgtatgattataatcatattgtga |
136 |
Q |
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| T |
36808755 |
aatgaaaatgtttgtatgattataatcatattgtga |
36808790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 290 - 390
Target Start/End: Complemental strand, 36509831 - 36509735
Alignment:
| Q |
290 |
ttttttggttggtcattggtgtacacttaaactttgggatgttcctagtatagcttgttttagctcttgaactgatgtatgttgtttgtcttagactctt |
389 |
Q |
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| T |
36509831 |
ttttttggtttgccattggtgtacacttaaacttttggatgtt-ctag--tagcttgttttagctctt-aactaatgtatgttgtttgtcttagactctt |
36509736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 33450280 - 33450335
Alignment:
| Q |
71 |
tgacatgaggtattatcgagaaatttattaaatgaaaatgtttgtatgattataat |
126 |
Q |
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| T |
33450280 |
tgacatgaggttttattgagaaatttatgaaatgaaaatgtttataagattataat |
33450335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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