View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_high_11 (Length: 352)
Name: NF9719_high_11
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 111 - 262
Target Start/End: Original strand, 29486884 - 29487038
Alignment:
| Q |
111 |
cttcagtatatagttcagtttgatttttcacatcaaaaggactggtatcaatataaaccggaagaataagtctatatggtttaatgttgttgttctgctg |
210 |
Q |
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| T |
29486884 |
cttcactatatggtacagtttgattttgcacatcagaaggactgatatcaacataaaccggaagaataagtctatatggtttagggttgttgttctcctg |
29486983 |
T |
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| Q |
211 |
aaagttgtcaacaatagaggcaagt---acatccaagcaaaaggatgaaaaaaca |
262 |
Q |
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| T |
29486984 |
aaagttgtcaacaatggaggcaagtacgacatccaagcaaaaggatgaagaaaca |
29487038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 29486811 - 29486887
Alignment:
| Q |
5 |
tgtttcaaattccaggcggacaagttagctacatgagatagagcgttcctccatttaaacaatttattcttgtcttc |
81 |
Q |
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| T |
29486811 |
tgtttgaaattccacgcgggcaagttagctacacgagatagagcgttcctccatttaatcaatttattattgtcttc |
29486887 |
T |
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