View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_high_12 (Length: 322)
Name: NF9719_high_12
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 20471071 - 20470784
Alignment:
| Q |
18 |
ataagaaaaatgagactggtattatttcatatactcaagtggagacaactctcaaattataggatcaatcaaggattctgataggacacctacacatatt |
117 |
Q |
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| T |
20471071 |
ataagaaaaacgagactgatattatttcatatactcaagtggagacaactttcaaattataggatcaatcaaggattctgataggacacctacacatatt |
20470972 |
T |
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| Q |
118 |
ctagaagaaaatgaggcca-cgggagagagaacggaagttggttagtgacttggagctagattttaggatagttggatgagaatatattgtgagttgtgg |
216 |
Q |
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| T |
20470971 |
ctagaagaaaatgaggccaacgggagagaggacggaagttggttagtgacttggagctagattttaggatagttggatgagaatatattgtgagtagtgc |
20470872 |
T |
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| Q |
217 |
tgagtgaggggattcattcatgtattttctagttggtctttaagagagtttctctctggtaggagcatagctttgtattagaactctc |
304 |
Q |
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| T |
20470871 |
tgagtgaggggattcattcatgtattttctagttggtctttaagagagtttctctctggtaggagcatagctttgtattaggactctc |
20470784 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 1734449 - 1734545
Alignment:
| Q |
94 |
tctgataggacacctacacatattctagaagaaaatgaggccacgggagagagaacggaagttggttagtgacttggagctagattttaggatagtt |
190 |
Q |
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| T |
1734449 |
tctgataggaaacctaggtatattctagaaggaagtggggccatgagagagagaatgaaagttagtttgtgacgtgtagctagattctaggagagtt |
1734545 |
T |
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