View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9719_high_17 (Length: 257)
Name: NF9719_high_17
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_high_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 32680186 - 32680430
Alignment:
| Q |
1 |
ttaaaaggatcagagggagtatctgacaatgtaaaccaaagcactacaaagacagacaaattagttttcaattttcaccttgttcggtaataaggatttc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32680186 |
ttaaaaggattagagggagtatctgacaatgtaaaccaaagcactacaaagacagacaaattagttttcaattttcaccttgttcagtaataaggatttc |
32680285 |
T |
|
| Q |
101 |
tcttcagctgccctttcaagtgcagttgtcgctgaactgagtagagaattaagaaagctcaacgaaggttgttgaaattcaacggaagtagggtaactgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32680286 |
tcttcagctgccctttcaagtgcagttgtcgctgaactgagtagagaattaagaaagcacaacgaaggttgttgaaattcaacggaagtagggtaactgg |
32680385 |
T |
|
| Q |
201 |
gggaggcatcagaagactgagattacatttgataaggaaaatatt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32680386 |
gggaggcatcagaagactgagattacattttataaggaaaatatt |
32680430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 40116880 - 40117105
Alignment:
| Q |
20 |
tatctgacaatgtaaaccaaagcactacaaagacagacaaattagttttcaattttcaccttgttcggtaataaggatttctcttcagctgccctttcaa |
119 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||| |||||||||||||||| || ||||| ||||| | |
|
|
| T |
40116880 |
tatcagacaatgtaaaccaaagcactagaaagacgaacaaatcagttttcaattttcaccttgttcagtaataaggatttctcctcggctgctctttcca |
40116979 |
T |
|
| Q |
120 |
gtgcagttgtcgctgaactgagtagagaattaagaaagctcaacgaaggttgttgaaattcaacggaagtagggtaactgggggaggcatcagaagactg |
219 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| |
|
|
| T |
40116980 |
gtgcagttgtagctgaactgagtaaagaattaagcaagctcaatgaaggttgttgaaattcaacagaagtagggtaactggaggaggcatcggaagactg |
40117079 |
T |
|
| Q |
220 |
agattacatttgataaggaaaatatt |
245 |
Q |
| |
|
|||| ||||| | ||| |||||||| |
|
|
| T |
40117080 |
agatatcattttacaagaaaaatatt |
40117105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University