View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_high_19 (Length: 252)
Name: NF9719_high_19
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 2 - 242
Target Start/End: Complemental strand, 52560690 - 52560452
Alignment:
| Q |
2 |
tacacatgtttcttaccaaattcatttttccattctctttttaaagttttccatgcaccccaaaaatatggtggttaaacattctttgatgacnnnnnnn |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52560690 |
tacacatgtttcttaccaaattcatttttccattctctttttaaagttttccatgcaccccaaaaatatggtggttaaacattcattgatga--tttatt |
52560593 |
T |
|
| Q |
102 |
nnnnnnggtatgattctacgctatggtaagtatttattttattctgtttctttccaatggttgttaaacattctcattctctttatgtttccatcatatg |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
52560592 |
ttttttggtatgattctacgctatggtaagtatttattttattctgtttctttccaatggtagctaaacattctcattctctttatgtttccatcatatg |
52560493 |
T |
|
| Q |
202 |
gttgtttagtctattcgttctctatatttgtctatcctatg |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
52560492 |
gttgtttagtctattcgttctctatatttgtctatcctatg |
52560452 |
T |
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