View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_high_2 (Length: 580)
Name: NF9719_high_2
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 16 - 564
Target Start/End: Original strand, 7904764 - 7905304
Alignment:
| Q |
16 |
acaaagagcagcgcgatgatggtttacggatggcttggccatgaactgactcagttgctgtgtggcaaaactgatgtcagggcgagtcgtagtcaagtat |
115 |
Q |
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| T |
7904764 |
acaaagagcagtgcgatgatggtttacggatggcttggccatgaactgactcagttgctgtgtggcaaaactgatgtcagggcgagtcgtagtcaagtat |
7904863 |
T |
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| Q |
116 |
aacaagcaaccaatgagacggcgataagccaaaacatcatcaaagggaggtccatcatcaatgtggagacgacaagcataatcaagaggagtactaaccg |
215 |
Q |
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| T |
7904864 |
aacaagcaaccaatgagacagcgataagccaaaacatcatcaaagggaggtccatcatcaatgtgaagaagacaagcataatcaagaggagtactaaccg |
7904963 |
T |
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| Q |
216 |
gtttacaagtggttaggcctgcatctgaaagtaagtcgaggcaatatttgcgttgacagagggatatacctttaaaccttttgaggaatgagcaacctcc |
315 |
Q |
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| T |
7904964 |
atttacaagtggttaggcctgcatctgaaagtaagtcgaggcaatatttgcgttgacagagggatatacct--------tttgaggaatgagcaacctcc |
7905055 |
T |
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| Q |
316 |
aagccaagaaagaacttgagctggccaaggtctttgatacgaaaatgatgatcaagcaattgcttaatctcagcaaaagcagcaaggcagtcaccagcca |
415 |
Q |
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| T |
7905056 |
aagccaagaaagaacttgagctagcctaggtctttgatacgaaaatgatgatcaagcaattgcttaatctcagcaaaagcagcaaggcagtcaccagcca |
7905155 |
T |
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| Q |
416 |
atataatgtcattcacgtatattaataaagctgtgaaagaagttggagaagcacgaattaaaaaggagtgatcagctgaagcttgcacaaaaccaatggt |
515 |
Q |
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| T |
7905156 |
atataatgtcattcacgtatattaataaagctgtgaaagaagttggagaagcacgaattaaaaaggagtgatcagctgaagcttgcacaaaaccaatggt |
7905255 |
T |
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| Q |
516 |
caggaggagtgaaataagcttttcaaaccaacgccggctggcatgtttg |
564 |
Q |
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| T |
7905256 |
caggaggagtgaaataagcttttcaaaccaacgccggctggcttgtttg |
7905304 |
T |
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