View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9719_high_21 (Length: 248)
Name: NF9719_high_21
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_high_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 6109337 - 6109118
Alignment:
| Q |
19 |
acattacacttacattcattttcaatcatgtacctccactgataagctattccttcttcagcttcctttgaagcatcagaagtgaaaacaagaagtcggc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6109337 |
acattacacttacattcattttcaatcatgtacttccactgataagctattccttcttcagcttcctttgaagcatcagaagtgaaaacaagaagtcggc |
6109238 |
T |
|
| Q |
119 |
gatttgcttgagccatctgtgttatagtaggccaatcttcaccattttttggcatatcagacacggggaacaaatatttatccagaccagcatttatgaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6109237 |
gatttgcttgagccatctgtgttatagtaggccaatcttcaccattttttggcatatcagacacggggaacaaatatttatccagaccagcatttatgaa |
6109138 |
T |
|
| Q |
219 |
cagattaatcaacgcctttg |
238 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6109137 |
cagattaatcaacgcctttg |
6109118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 27 - 225
Target Start/End: Original strand, 39065814 - 39066012
Alignment:
| Q |
27 |
cttacattcattttcaatcatgtacctccactgataagctattccttcttcagcttcctttgaagcatcagaagtgaaaacaagaagtcggcgatttgct |
126 |
Q |
| |
|
|||||| |||||||||| || || | ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
39065814 |
cttacactcattttcaaccacgtgcttccactgataagctattccttctccagcttccttcgaagcatcagaagtgaaaacaacaagtcggtgatttgct |
39065913 |
T |
|
| Q |
127 |
tgagccatctgtgttatagtaggccaatcttcaccattttttggcatatcagacacggggaacaaatatttatccagaccagcatttatgaacagatta |
225 |
Q |
| |
|
||| |||||| |||| ||| |||||||| | ||| ||||| ||||| | |||||||| ||| |||| ||||||| |||||| || |||| |||||| |
|
|
| T |
39065914 |
tgaaccatctcggttacagtgggccaatcattaccctttttcggcatctttgacacgggaaaccaatacttatccaatccagcacttgtgaaaagatta |
39066012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University