View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_high_27 (Length: 232)
Name: NF9719_high_27
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_high_27 |
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| [»] scaffold0300 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 23 - 160
Target Start/End: Original strand, 24679012 - 24679149
Alignment:
| Q |
23 |
atgactttatataatggttcgatatggcatgcttgatgttaaactaatattatatgtgactatatgaatgcaggtaatggaaacaaaaggaacttctaaa |
122 |
Q |
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| T |
24679012 |
atgactttatataatggttcggtacggcatgcttgatgttaaattaatattatatgtgactatatgaatgcaggaaatggaaacaaaaggaacttctaaa |
24679111 |
T |
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| Q |
123 |
ttgacaactatgtacgcattatggtcaacattagatga |
160 |
Q |
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| T |
24679112 |
ttgacaactatgtacacattatggtcaacattagatga |
24679149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 24679265 - 24679314
Alignment:
| Q |
160 |
agaatgttcatgtcattttataactctatagaaaatgtttcttattttcg |
209 |
Q |
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| T |
24679265 |
agaatgttcatgtaattttataactatatagaaaatgtttcttattttcg |
24679314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 3114 - 2978
Alignment:
| Q |
23 |
atgactttatataatggttcgatatggcatgcttgatgttaaactaatattatatgtgactatatgaatgcaggtaatggaaacaaaaggaacttctaaa |
122 |
Q |
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| T |
3114 |
atgactttatataattgttcggtacggcatgtttggtgtaaaattaatattatatgtgactatatgaatgcaggtaatgcaaacaaaaggaacttctaaa |
3015 |
T |
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| Q |
123 |
ttgacaactatgtacgcattatggtcaacattagatg |
159 |
Q |
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| T |
3014 |
ttgacaactatgtacacattatggtcaacattagatg |
2978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 2863 - 2805
Alignment:
| Q |
158 |
tgagaatgttcatgtcattttataactctatagaaaatgtttcttattttcgggtctgt |
216 |
Q |
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| T |
2863 |
tgagaatgttcatgtcattttataactctatagaaaatgtttcttattttcgggtctgt |
2805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 25341590 - 25341478
Alignment:
| Q |
48 |
ggcatgcttgatgttaaactaatattatatgtgactatatgaatgcaggtaatggaaacaaaaggaacttctaaattgacaactatgtacgcattatggt |
147 |
Q |
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| T |
25341590 |
ggcatgcttggtgttaaattaatattatatgtgactatatgaatgcaggaaatggaagcaaaatgaacttctaaattgacaactttgaacacattatggt |
25341491 |
T |
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| Q |
148 |
caacattagatga |
160 |
Q |
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| T |
25341490 |
cagaattagatga |
25341478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 25346073 - 25345961
Alignment:
| Q |
48 |
ggcatgcttgatgttaaactaatattatatgtgactatatgaatgcaggtaatggaaacaaaaggaacttctaaattgacaactatgtacgcattatggt |
147 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| || || ||||||||| |
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| T |
25346073 |
ggcatgcttggtgttaaattaatattatatgtgactatatgaatgcaggaaatggaagcaaaatgaacttctaaattgacaactttgaacacattatggt |
25345974 |
T |
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| Q |
148 |
caacattagatga |
160 |
Q |
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| T |
25345973 |
cagaattagatga |
25345961 |
T |
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