View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_high_5 (Length: 411)
Name: NF9719_high_5
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 35018894 - 35019234
Alignment:
| Q |
18 |
gttcgttcttgattgaaacatgaagcaagagtaacatcaaatatcattccacttatgctaaaaaatatcgtatgacaaaaatgaatagaataaataaata |
117 |
Q |
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| T |
35018894 |
gttcgttcttgattgaaacatgaagcaagagtaacatcaaatatcattccacttatgctaaaaaatatcgtatgacaaaaatgaatagaataaataaata |
35018993 |
T |
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| Q |
118 |
caaagatgtatgatgtcnnnnnnnctttctttctgaaagctactttatatttaagtaatacaaattgagttcatatagcttgacatgcaacgtgaatata |
217 |
Q |
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| T |
35018994 |
caaagatgtatgatgtct-------ttttttcctgaaagctactttatatttaagtaatacaaa-tgagttcatatagcttgacatgcaacgtgaatata |
35019085 |
T |
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| Q |
218 |
taaacatcataaatccataacttgttcacattttgcctttaagttagca-------ttataaggatttgaccatttagccaactttattttttaagaaat |
310 |
Q |
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| T |
35019086 |
tgaacatcataaatccataacttgttcacattttgcctttaggttagcattataatttataaggatttgaccatttagccaactttattttttaagaaat |
35019185 |
T |
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| Q |
311 |
gtggataaccttaggcaactaatacaatgatgaataggtgctaattaat |
359 |
Q |
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| T |
35019186 |
gtggataaccttaggcaactaatacaatgatgaataggtgctaattaat |
35019234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 35041112 - 35041183
Alignment:
| Q |
18 |
gttcgttcttgattgaaacatgaagcaagagt-aacatcaa-atatcattccacttatgctaaaaaatatcg |
87 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||| | |||||||||| ||||||||||| ||||| |
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| T |
35041112 |
gttcgttcttgattgaaacaagaagcaagagtgaacatcaatacatcattccacctatgctaaaaattatcg |
35041183 |
T |
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