View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_high_6 (Length: 397)
Name: NF9719_high_6
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 387
Target Start/End: Complemental strand, 6731771 - 6731391
Alignment:
| Q |
7 |
tatctactctaccgagctcgttgcatgaccttcattgataagagtcagcaatatgttgtgccctacttcaggaaaaa-tttaagaaaccttaataccatt |
105 |
Q |
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| T |
6731771 |
tatctactctaactagatcgttgcatgaccttcattgataagagtcagcaatatgttgtgccctacttcaggaaaaaatttaagaaaccttaataccatt |
6731672 |
T |
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| Q |
106 |
gtcagaacatttaagatattcccacatttgtttgtgacannnnnnnaggctttgatcgtaaagcattttgaggacatatattctagggtacatgatccga |
205 |
Q |
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| T |
6731671 |
gtcagaacatttaagatattcccacatttgtttgtgacatttttttaggctttgatcgtaaagcattttgaggacatatgttctagggtacatgatccga |
6731572 |
T |
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| Q |
206 |
actatgacgagtccaaacaacaaatgtgccagtttatttttgaaacccgtgtcttctcatctaagtttttctcggttcatttgtacacaccacccctttc |
305 |
Q |
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| T |
6731571 |
actatgacgagtccaaacaacaaatgtgccagtttatttttgagacccgtgtcttctcatctaagtttttctcggttcatttgtacacaccacctctttc |
6731472 |
T |
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| Q |
306 |
ataatctttcacnnnnnnnnttgctttcttcgtttagaaccattatctaattggtctataactatagtaaatcttacctttg |
387 |
Q |
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| T |
6731471 |
ataatcttgcac-aaaaaaattgctttcttcgttcagaaccattatctaattggtctataactatagtaaatcttacctttg |
6731391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 313
Target Start/End: Complemental strand, 6732379 - 6732266
Alignment:
| Q |
201 |
tccgaactatgacgagtccaaacaacaaatgtgccagtttatttttgaaacccgtgtcttctcatct-aagtttttctcggttcatttgtacacaccacc |
299 |
Q |
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||||||||||||||||| ||||| ||| |||||| |||| ||| |||| || ||||||| ||||| || || |||| ||||||||||||||||||||| |
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| T |
6732379 |
tccgaactatgacgagttcaaaccacatatgtgctagttcattcttgagacatgtgtctttccatctcaaattcttcttggttcatttgtacacaccacc |
6732280 |
T |
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| Q |
300 |
cctttcataatctt |
313 |
Q |
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|||| ||||||||| |
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| T |
6732279 |
ccttccataatctt |
6732266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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