View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9719_low_14 (Length: 382)
Name: NF9719_low_14
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 44 - 317
Target Start/End: Complemental strand, 48753910 - 48753640
Alignment:
| Q |
44 |
ggaataaggaatgtgcaaaatcgttcaatacttgtacatatcaaatatggttttaaaacaaccttagaactttgaaaagaaccataacaaatcatgtctc |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48753910 |
ggaataaggaatgtgcaaaatcgttcaatacttgtacatatcaaatatggttttaaaacaaccttagaactttgaaaagaaccataacaaatcatgtctc |
48753811 |
T |
|
| Q |
144 |
caatcaaatttgaggttaaatgagagccctttaaagacgaggcatgtgtatgtaaagcaatactatctaagtagcaaattagaatggaaaggtaaaaata |
243 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48753810 |
caatcaaatttaaggttaaatgagagccctttaaagacgaggcatgtgtatgtaaagcaa---tatctaagtagcaaattagaatggaaaggtaaaaata |
48753714 |
T |
|
| Q |
244 |
tgcaatcgagtccaataaaaacatcataagtaacaaaaatatgcaaacatctagaataattaaattattacata |
317 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48753713 |
tgcaatcgagtccaataagaacatcataagtaacaaaaatatgcaaacatctagaataattaaattattacata |
48753640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 48753308 - 48753251
Alignment:
| Q |
315 |
ataataccaacaatatttctactgatttgtgtttattgcttgctttactgcttctctg |
372 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48753308 |
ataataccaacaatatttctactcatttgtgtttattgcttgctttactgcttctctg |
48753251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 48754622 - 48754562
Alignment:
| Q |
230 |
gaaaggtaaaaatatgcaatcgagtccaataaaaacatcataagtaacaaaaatatgcaaa |
290 |
Q |
| |
|
|||||||||||||||||||| | | |||||| ||||||| || || |||||||||||||| |
|
|
| T |
48754622 |
gaaaggtaaaaatatgcaatataattcaataagaacatcaaaattagcaaaaatatgcaaa |
48754562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 52091762 - 52091903
Alignment:
| Q |
44 |
ggaataaggaatgtgcaaa-atcgttcaatacttgtacatatcaaatatggttttaaaacaaccttagaactttgaaaagaaccataacaaatcatgtct |
142 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52091762 |
ggaataaggaatgtgcaaagatcgttcaatacttctacatatcaaatatggttttaaa-caatcttagaactttgaaaagaaccataacaaatcatgtct |
52091860 |
T |
|
| Q |
143 |
ccaatcaaatttgaggttaaatgagagccctttaaagacgaggca |
187 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
52091861 |
ccaatcaaatttaaggttaaat--gagccctttaaagacgaggca |
52091903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 52091903 - 52091967
Alignment:
| Q |
226 |
aatggaaaggtaaaaatatgcaatcgagtccaataaaaacatcataagtaacaaaaatatgcaaa |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
52091903 |
aatggaaaggtaaaaatatgcaatcgagtccaataagaacatcataagcaacaaaaatatacaaa |
52091967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 52092412 - 52092453
Alignment:
| Q |
315 |
ataataccaacaatatttctactgatttgtgtttattgcttg |
356 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
52092412 |
ataataccaaaaatatttctactaatttgtgtttattgcttg |
52092453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 317
Target Start/End: Original strand, 52092029 - 52092059
Alignment:
| Q |
287 |
caaacatctagaataattaaattattacata |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
52092029 |
caaacatctagaataattaaattattacata |
52092059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 52091007 - 52091067
Alignment:
| Q |
230 |
gaaaggtaaaaatatgcaatcgagtccaataaaaacatcataagtaacaaaaatatgcaaa |
290 |
Q |
| |
|
||||||||||||||| |||| || | |||||| ||||||| || || |||||||||||||| |
|
|
| T |
52091007 |
gaaaggtaaaaatatacaatagaattcaataagaacatcaaaattagcaaaaatatgcaaa |
52091067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 38462259 - 38462201
Alignment:
| Q |
44 |
ggaataaggaatgtgcaaa-atcgttcaatacttgtacatatcaaatatggttttaaaa |
101 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||||| ||||| || ||||||||||||||| |
|
|
| T |
38462259 |
ggaataaggaatgtacaaagatctttcaatacttctacatgtcgaatatggttttaaaa |
38462201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 33575832 - 33575776
Alignment:
| Q |
315 |
ataataccaacaatatttctactgatttgtgtttattgcttgctttactgcttctctg |
372 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| |||||| |||||||| |
|
|
| T |
33575832 |
ataataccaacaccttttctactcatttgtgtttattgcttg-tttactacttctctg |
33575776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University