View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_low_17 (Length: 336)
Name: NF9719_low_17
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 71 - 320
Target Start/End: Original strand, 3889537 - 3889785
Alignment:
| Q |
71 |
aagaaagtgtgtaataaatagaaaaatctgaaaatgaaacaaatgggctcaactgtgtggacatgggcttggttaggcccaatttgatagcatcataaga |
170 |
Q |
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| T |
3889537 |
aagaaagtgtgtaataaatagaaaaatctgaaaatgaaacaaatgggctcaactgtgtggacatgggcttggttaggcccaatttgataacatcataaga |
3889636 |
T |
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| Q |
171 |
aaaagagagacaaaaaccctaatttctatcatctttgagtt-gagctcactcgccgtatcgcgaacgaagaagctgagatccaaatcaacatttcacaat |
269 |
Q |
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| T |
3889637 |
aa--gagagacaaaaaccctaatttctatcatctttgagtttgagctcactcgccgtatcgcgaacgaagaagctgagatccaaatcaacatttcacaat |
3889734 |
T |
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| Q |
270 |
gaaggttttcctctcaatccctaatttcgtttgttcctttgatttcattgc |
320 |
Q |
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| T |
3889735 |
gaaggttttcctctcaatccctaatttcgtttgttcctttgatttcattgc |
3889785 |
T |
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