View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_low_21 (Length: 296)
Name: NF9719_low_21
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 3100356 - 3100072
Alignment:
| Q |
1 |
gcatatctcatctggaaccctacccatcttctgccacgtgtgacccctcatcataaccaattcaccattgcaacacatataaacactctcctcctcatca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3100356 |
gcatatctcatctggaaccctacccatcttctgccacgtgtgagccctcatcataaccaattcaccattgcaacacatataaacactctcctcctcatca |
3100257 |
T |
|
| Q |
101 |
ccaccgtccaccaaagtcataggacacgtggcacaatccaaatactcttcctccacttgaccccacttccacgtcacaaaatcaaacgcctccgcactcc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3100256 |
ccaccgtccaccaaagtcataggacacgtggcacaatccaaatactcttcctccacttgaccccacttccacgtcacaaaatcaaacgcctccgcactcc |
3100157 |
T |
|
| Q |
201 |
tctcaaacctcccttgattctccgtcgtgtaaccaccaacaactataaacctcccgccacggaacaccgccttacactcgtctct |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3100156 |
tctcaaacctcccttgattctccgtcgtgtaaccaccaacaactataaacctcccgccacggaacaccgccttacactcgtctct |
3100072 |
T |
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