View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9719_low_22 (Length: 285)

Name: NF9719_low_22
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9719_low_22
NF9719_low_22
[»] chr4 (2 HSPs)
chr4 (13-271)||(49465210-49465468)
chr4 (24-207)||(8349121-8349304)
[»] chr7 (4 HSPs)
chr7 (13-247)||(29462737-29462971)
chr7 (13-271)||(19890325-19890583)
chr7 (16-217)||(19844522-19844723)
chr7 (25-118)||(19877506-19877599)
[»] chr8 (4 HSPs)
chr8 (13-226)||(1093022-1093235)
chr8 (25-138)||(26396044-26396157)
chr8 (24-207)||(26168364-26168547)
chr8 (24-231)||(25224835-25225042)
[»] chr1 (3 HSPs)
chr1 (17-134)||(33769073-33769190)
chr1 (25-134)||(33772363-33772472)
chr1 (17-136)||(33764213-33764332)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 49465210 - 49465468
Alignment:
Q  13 cttacatcaacatcttgttcatgaaagctacggattccatcaatcatttcatccaagacggtaatgggaatttcatgattaatcacctgaaaaaatcccc 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49465210 cttacatcagcatcttgttcatgaaagctacggattccatcaatcatttcatccaagacggtaatgggaatttcatgattaatcacctgaaaaaatcccc 49465309  T
Q  113 actcatggcatgcacttcgaatttgatgaattacatctacacgttgagctggattgttgtgtatgtctttgaggtctacaatcggaacactcaacttgga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49465310 actcatggcatgcacttcgaatttgatgaattacatctacacgttgagctggattgttgtgtatgtctttgaggtctacaatcggaacactcaacttgga 49465409  T
Q  213 gtcactagttgagttttcaccgatgtccaacttcccggcatggaaaaagcgtgggatct 271  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49465410 gtcacaagttgagttttcaccgatgtccaacttcccggcatggaaaaagcgtgggatct 49465468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 8349304 - 8349121
Alignment:
Q  24 atcttgttcatgaaagctacggattccatcaatcatttcatccaagacggtaatgggaatttcatgattaatcacctgaaaaaatccccactcatggcat 123  Q
    ||||||||||||||| ||||| |||||||||||  |||||||||| ||  ||||||||||| ||||||||||||| | ||||||||||||||| | ||||    
T  8349304 atcttgttcatgaaacctacgaattccatcaattgtttcatccaatacattaatgggaattccatgattaatcactttaaaaaatccccactccttgcat 8349205  T
Q  124 gcacttcgaatttgatgaattacatctacacgttgagctggattgttgtgtatgtctttgaggtctacaatcggaacactcaac 207  Q
    ||| |||||||||| | |||||| || |||||  |||  ||||   |||| ||||||||||| ||||  || ||||||||||||    
T  8349204 gcagttcgaatttggttaattacttcaacacgacgagaaggataaatgtggatgtctttgagatctatgataggaacactcaac 8349121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 29462971 - 29462737
Alignment:
Q  13 cttacatcaacatcttgttcatgaaagctacggattccatcaatcatttcatccaagacggtaatgggaatttcatgattaatcacctgaaaaaatcccc 112  Q
    ||||||||  |||||||||||||||| |||| |||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||    
T  29462971 cttacatcggcatcttgttcatgaaacctacagattccatcaatcatttcatccaagacaataataggaatttcatgattaatcacctgaaaaaatcccc 29462872  T
Q  113 actcatggcatgcacttcgaatttgatgaattacatctacacgttgagctggattgttgtgtatgtctttgaggtctacaatcggaacactcaacttgga 212  Q
    ||||||||||||||||||||||||| | |||||| |||||||| |||||||||||| ||||||| |||||||||||||| || |||| ||||||||||||    
T  29462871 actcatggcatgcacttcgaatttggtcaattacctctacacgctgagctggattgatgtgtatatctttgaggtctacgataggaatactcaacttgga 29462772  T
Q  213 gtcactagttgagttttcaccgatgtccaacttcc 247  Q
    |||||||| || | |||||  ||| ||||||||||    
T  29462771 gtcactagctgtgctttcagagatttccaacttcc 29462737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 19890583 - 19890325
Alignment:
Q  13 cttacatcaacatcttgttcatgaaagctacggattccatcaatcatttcatccaagacggtaatgggaatttcatgattaatcacctgaaaaaatcccc 112  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||   ||||||||| ||||||||||| |||||||||||||| |    
T  19890583 cttacatcaacatcttgttcatgaaaactacggattccatgaatcatttcatccaagacatcaatgggaatatcatgattaattacctgaaaaaatccac 19890484  T
Q  113 actcatggcatgcacttcgaatttgatgaattacatctacacgttgagctggattgttgtgtatgtctttgaggtctacaatcggaacactcaacttgga 212  Q
     | |||| ||||||||| ||||||| | |||||| || ||||| |||||| ||| | ||||||| |||||||||||||| || ||||||||||| || ||    
T  19890483 ccacatgacatgcactttgaatttgttcaattacctcgacacgctgagcttgatcgatgtgtatatctttgaggtctacgatgggaacactcaatttaga 19890384  T
Q  213 gtcactagttgagttttcaccgatgtccaacttcccggcatggaaaaagcgtgggatct 271  Q
     |||||||  |||||||||||||| |||||||| |||| ||| |||| ||| |||||||    
T  19890383 atcactagccgagttttcaccgatatccaacttaccggtatgaaaaatgcgcgggatct 19890325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 19844723 - 19844522
Alignment:
Q  16 acatcaacatcttgttcatgaaagctacggattccatcaatcatttcatccaagacggtaatgggaatttcatgattaatcacctgaaaaaatccccact 115  Q
    |||| ||||||||||||||||||| |||||||||||| |||||| |||||||| ||  | ||||||||||||||||||||||||||||||||||||||||    
T  19844723 acattaacatcttgttcatgaaagttacggattccatgaatcatctcatccaatacattgatgggaatttcatgattaatcacctgaaaaaatccccact 19844624  T
Q  116 catggcatgcacttcgaatttgatgaattacatctacacgttgagctggattgttgtgtatgtctttgaggtctacaatcggaacactcaacttggagtc 215  Q
    |||| ||||||||||||||||    |||||| ||| ||||  ||| ||||||| ||| |||  |||||||||| |  || |||| | ||||||| |||||    
T  19844623 catgacatgcacttcgaattttgccaattacctcttcacgcagagttggattgatgtctatacctttgaggtcaatgatgggaatattcaacttagagtc 19844524  T
Q  216 ac 217  Q
    ||    
T  19844523 ac 19844522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 19877506 - 19877599
Alignment:
Q  25 tcttgttcatgaaagctacggattccatcaatcatttcatccaagacggtaatgggaatttcatgattaatcacctgaaaaaatccccactcat 118  Q
    ||||||||||||||   ||| ||| | || |||||||||||||||||    ||||| ||||||||||||||||| |||||||||||||||||||    
T  19877506 tcttgttcatgaaatgaacgaatttcttcgatcatttcatccaagacatagatggggatttcatgattaatcacttgaaaaaatccccactcat 19877599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 1093235 - 1093022
Alignment:
Q  13 cttacatcaacatcttgttcatgaaagctacggattccatcaatcatttcatccaagacggtaatgggaatttcatgattaatcacctgaaaaaatcccc 112  Q
    ||||||| | |||||||||| |||||  |||  ||||||||||||||||||||||||||  |||||||||||||||||||||| | ||||||||||||||    
T  1093235 cttacattagcatcttgttcgtgaaacttactaattccatcaatcatttcatccaagacattaatgggaatttcatgattaattatctgaaaaaatcccc 1093136  T
Q  113 actcatggcatgcacttcgaatttgatgaattacatctacacgttgagctggattgttgtgtatgtctttgaggtctacaatcggaacactcaacttgga 212  Q
    ||||||||||||||||| |||||||   |||||| ||||||||| |||||||||||||||||||||||||||||||||  || |||| ||||||||||||    
T  1093135 actcatggcatgcactttgaatttggccaattacctctacacgtcgagctggattgttgtgtatgtctttgaggtctatgatgggaatactcaacttgga 1093036  T
Q  213 gtcactagttgagt 226  Q
     ||||||| |||||    
T  1093035 ctcactagctgagt 1093022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 26396157 - 26396044
Alignment:
Q  25 tcttgttcatgaaagctacggattccatcaatcatttcatccaagacggtaatgggaatttcatgattaatcacctgaaaaaatccccactcatggcatg 124  Q
    |||||||||||||| ||||| | |||||||| |||||||||||| ||   |||||||||||||||||||||||| ||||||||||||||||| |  ||||    
T  26396157 tcttgttcatgaaacctacgaaatccatcaagcatttcatccaatacacaaatgggaatttcatgattaatcacttgaaaaaatccccactccttacatg 26396058  T
Q  125 cacttcgaatttga 138  Q
    || |||||||||||    
T  26396057 cagttcgaatttga 26396044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 26168547 - 26168364
Alignment:
Q  24 atcttgttcatgaaagctacggattccatcaatcatttcatccaagacggtaatgggaatttcatgattaatcacctgaaaaaatccccactcatggcat 123  Q
    ||||||||||||||| ||||| |||||||||||  |||||||||| ||   |||||||||| ||||||||||||| ||||||||||||||||| | ||||    
T  26168547 atcttgttcatgaaacctacgaattccatcaattgtttcatccaatacatcaatgggaattccatgattaatcacttgaaaaaatccccactccttgcat 26168448  T
Q  124 gcacttcgaatttgatgaattacatctacacgttgagctggattgttgtgtatgtctttgaggtctacaatcggaacactcaac 207  Q
    ||  |||| ||||| | |||||| || |||||  |||  ||||   |||| ||||||||||||||||  || |||||| |||||    
T  26168447 gcggttcggatttggttaattacttcaacacgacgagagggatcaatgtggatgtctttgaggtctatgatgggaacattcaac 26168364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 231
Target Start/End: Original strand, 25224835 - 25225042
Alignment:
Q  24 atcttgttcatgaaagctacggattccatcaatcatttcatccaagacggtaatgggaatttcatgattaatcacctgaaaaaatccccactcatggcat 123  Q
    ||||||||||||||| ||||| ||||||| |||  |||||||||| ||  |||| |||||| ||||||||||||| |||||||||||| |||| | ||||    
T  25224835 atcttgttcatgaaacctacgaattccattaattgtttcatccaatacattaattggaattccatgattaatcacttgaaaaaatccctactccttgcat 25224934  T
Q  124 gcacttcgaatttgatgaattacatctacacgttgagctggattgttgtgtatgtctttgaggtctacaatcggaacactcaacttggagtcactagttg 223  Q
    ||   ||||||||| | |||||| || |||||  |||  ||||   |||| |||||||||| |||||  || |||||||||||| | |||| | |  |||    
T  25224935 gcggatcgaatttggttaattacttcaacacgacgagaaggatcaatgtggatgtctttgaagtctatgatgggaacactcaacattgagttattgattg 25225034  T
Q  224 agttttca 231  Q
    ||||||||    
T  25225035 agttttca 25225042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 33769073 - 33769190
Alignment:
Q  17 catcaacatcttgttcatgaaagctacggattccatcaatcatttcatccaagacggtaatgggaatttcatgattaatcacctgaaaaaatccccactc 116  Q
    ||||| |||||||||||||||| ||||||||||||  |||||| |||||||| ||  |||  |||||  ||||||||||||| |||||||||||||||||    
T  33769073 catcagcatcttgttcatgaaacctacggattccactaatcatctcatccaaaacaataaccggaataccatgattaatcacttgaaaaaatccccactc 33769172  T
Q  117 atggcatgcacttcgaat 134  Q
     | |||||||||||||||    
T  33769173 cttgcatgcacttcgaat 33769190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 33772363 - 33772472
Alignment:
Q  25 tcttgttcatgaaagctacggattccatcaatcatttcatccaagacggtaatgggaatttcatgattaatcacctgaaaaaatccccactcatggcatg 124  Q
    |||||||||||||| ||||||||||||  |||||| |||||||| ||| ||   |||||  ||||||||||||| |||||| ||||||| ||| | || |    
T  33772363 tcttgttcatgaaacctacggattccactaatcatctcatccaaaacgctatctggaataccatgattaatcacttgaaaacatccccattcacgacaag 33772462  T
Q  125 cacttcgaat 134  Q
    ||||||||||    
T  33772463 cacttcgaat 33772472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 33764213 - 33764332
Alignment:
Q  17 catcaacatcttgttcatgaaagctacggattccatcaatcatttcatccaagacggtaatgggaatttcatgattaatcacctgaaaaaatccccactc 116  Q
    ||||||| |||||||||||||| ||||||||| |   | |||| |||||||| ||  |||  |||||  ||||||||||||| || ||||||||||||||    
T  33764213 catcaacttcttgttcatgaaacctacggattgcgctagtcatctcatccaaaacactaaccggaataccatgattaatcacttggaaaaatccccactc 33764312  T
Q  117 atggcatgcacttcgaattt 136  Q
     | ||||||||| |||||||    
T  33764313 cttgcatgcactacgaattt 33764332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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