View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9719_low_23 (Length: 281)
Name: NF9719_low_23
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 17181370 - 17181179
Alignment:
| Q |
1 |
ttgactatctgcatagttttcagaacctttcctttcacctattctctaacaacaactttataaaaagctgctttttccaatcacctaaaagtaacttaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17181370 |
ttgactatctgcatagttttcagaacctttcctttcacctattctctaacaacaactttatcaaaagctgctttttccaatcaactaaaagtaacttaat |
17181271 |
T |
|
| Q |
101 |
caagatccaatgattttattttcacttcaatgacttctttctcttaaataggttactagttttccacataaaaatgtctcatcttaccatat |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17181270 |
caagatccaatgattttattttcacttcaatgacatctttctcttaaataggttactagttttccacataaaaatgtctcatctcaccatat |
17181179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University