View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_low_27 (Length: 259)
Name: NF9719_low_27
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 38447968 - 38447754
Alignment:
| Q |
19 |
tatcaaataaggttgtttagacaaaacattcatgatacattttgtggtagaatgaatgccatgcaggtgtctaatggcatcattgtgtcaaacaaaagat |
118 |
Q |
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| T |
38447968 |
tatcaaataaggttgtttagacaaaacattcgtgatacattttgtggtagaatgaatgccatgcaggtgtctaatggcatcattgtgtcaa--------- |
38447878 |
T |
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| Q |
119 |
ctggataactcatagtcaaaccaaataaccgtataagtaattctcaaagaaaatgatctggttttcatcaacaccttcctccaaagcaattgccttcttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38447877 |
---gataactcatagtcaaaccaaataaccgtataagtaatcctcaaagaaaatgatctggttttcatcaacaccttcctccaaagcaattgccttcttc |
38447781 |
T |
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| Q |
219 |
cagttatttatctctgacatctgatgt |
245 |
Q |
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| T |
38447780 |
cagttatttatctctgacatctgatgt |
38447754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 38550301 - 38550515
Alignment:
| Q |
19 |
tatcaaataaggttgtttagacaaaacattcatgatacattttgtggtagaatgaatgccatgcaggtgtctaatggcatcattgtgtcaaacaaaagat |
118 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38550301 |
tatcaaataaggttgtttagacaaaacattcgtgatacattttgtggtagaatgaatgccatgcaggtgtctaatggcatcattgtgtcaa--------- |
38550391 |
T |
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| Q |
119 |
ctggataactcatagtcaaaccaaataaccgtataagtaattctcaaagaaaatgatctggttttcatcaacaccttcctccaaagcaattgccttcttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38550392 |
---gataactcatagtcaaaccaaataaccgtataagtaatcctcaaagaaaatgatctggttttcatcaacaccttcctccaaagcaattgccttcttc |
38550488 |
T |
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| Q |
219 |
cagttatttatctctgacatctgatgt |
245 |
Q |
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| T |
38550489 |
cagttatttatctctgacatctgatgt |
38550515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 55780739 - 55780778
Alignment:
| Q |
18 |
ctatcaaataaggttgtttagacaaaacattcatgataca |
57 |
Q |
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| T |
55780739 |
ctatcaaataaggttgtttagacaaaacattcatgataca |
55780778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 55844919 - 55844958
Alignment:
| Q |
18 |
ctatcaaataaggttgtttagacaaaacattcatgataca |
57 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
55844919 |
ctatcaaataaggttgtttagacaaaacattcatgataca |
55844958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 38448399 - 38448347
Alignment:
| Q |
72 |
gaatgccatgcaggtgtctaatggcatcattgtgtcaaacaaaagatctggat |
124 |
Q |
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|||||||||| |||| ||||||| |||| |||||| |||||||||||||||| |
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| T |
38448399 |
gaatgccatgtaggtttctaatgacatcgttgtgttgaacaaaagatctggat |
38448347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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