View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_low_28 (Length: 259)
Name: NF9719_low_28
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 31405948 - 31405898
Alignment:
| Q |
114 |
ttgttcatccaaaattcacttattagtagggttagagtgcacaccattgtt |
164 |
Q |
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| T |
31405948 |
ttgttcttccaaaatgcacttattagtagggttagagtgcacaccaatgtt |
31405898 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 13007192 - 13007224
Alignment:
| Q |
199 |
attgaaagctatgaccttgtaagatggtacatg |
231 |
Q |
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| T |
13007192 |
attgaaagctatgaacttgtaagatggtacatg |
13007224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 13100992 - 13101024
Alignment:
| Q |
199 |
attgaaagctatgaccttgtaagatggtacatg |
231 |
Q |
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| T |
13100992 |
attgaaagctatgaacttgtaagatggtacatg |
13101024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 13204451 - 13204483
Alignment:
| Q |
199 |
attgaaagctatgaccttgtaagatggtacatg |
231 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
13204451 |
attgaaagctatgaacttgtaagatggtacatg |
13204483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 30368308 - 30368276
Alignment:
| Q |
199 |
attgaaagctatgaccttgtaagatggtacatg |
231 |
Q |
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|||||||||||||| |||||||||||||||||| |
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|
| T |
30368308 |
attgaaagctatgaacttgtaagatggtacatg |
30368276 |
T |
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