View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_low_32 (Length: 253)
Name: NF9719_low_32
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_low_32 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 5647553 - 5647309
Alignment:
| Q |
9 |
agaagcagagataaagaactataattttcattgaaccaatcaatagtccatcaaacaccaggtcttaatggacgaagttctggatttcgctccaaatatt |
108 |
Q |
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| T |
5647553 |
agaaccagagataaagaactataattttcattgaaccaatcaatagtccatcaaacaccaggtcttaatggacgaagttctggatttcgctccaaatatt |
5647454 |
T |
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| Q |
109 |
ggaatctctatggtacaattattcacagggcttgttgtaatcatcttcgtcattgttttcattcaatcaacaataatgatacagcttttgatattgttta |
208 |
Q |
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| T |
5647453 |
ggaatctctatggtacaattattcacagggcttgttgtagtcatcttcgtcattgttttcattcaatcaacaataatgatacagcttttgatattgttta |
5647354 |
T |
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| Q |
209 |
gtgtagtatataaaattgtctgtacaactacaattcaaataaaag |
253 |
Q |
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| T |
5647353 |
gtgtagtatataaaattgtctatacaactacaattcaaataaaag |
5647309 |
T |
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