View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_low_4 (Length: 513)
Name: NF9719_low_4
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 20 - 498
Target Start/End: Complemental strand, 5445897 - 5445419
Alignment:
| Q |
20 |
tgatcttcaaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaa |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5445897 |
tgatcttcaaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaa |
5445798 |
T |
|
| Q |
120 |
tgtggccttaacctggaacattccttcatcaatggtcactaaggaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5445797 |
tgtggccttaacctggaacattccttcatcaatggtcactaaggaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttct |
5445698 |
T |
|
| Q |
220 |
ctccacattttcttgtccaaaccataagcaatagcagctgcagtaggctcgttgatgatcctcatcacattaaaaccggcaatttttcctgcatcttttg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5445697 |
ctccacattttcttgtccaaaccataagcaatagcagctgcagtaggctcgttgatgatcctcatcacattaaaaccggcaatttttcctgcatcatttg |
5445598 |
T |
|
| Q |
320 |
tagcttgtctctgtgagttgttgaagtaggcaggaacagtgataacagcattgttcacttcatgacccaaataagtttcagcaacttcctttaacttaga |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5445597 |
tagcttgtctctgtgagttgttgaagtaggcaggaacagtgataacagcattgttcacttcatgacccaaataagtttcagcaacttcctttaacttaga |
5445498 |
T |
|
| Q |
420 |
caacaccatggaagatatctcttgaggtgaaaaatgtttctcttggcctttgtaattgacaacaatcatgggtttgtct |
498 |
Q |
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| T |
5445497 |
caacaccatggaagatatctcttgaggtgaaaaatgtttctcttggcctttgtaattgacaacaatcatgggtttgtct |
5445419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 5440777 - 5440996
Alignment:
| Q |
20 |
tgatcttcaaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaa--atga--gtatctc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| || |||| | ||||||| || | |||| || |
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| T |
5440777 |
tgatcttcaaatccttcttgtactttctataaaataattcaacaagaaggttcaccaaattgttatcaaactcaacatcacccaaacattaacgtatgtc |
5440876 |
T |
|
| Q |
116 |
ccaatgtggccttaacctggaacattccttcatcaatggt-cactaaggaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcac |
214 |
Q |
| |
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|||||| || ||||| | ||| |||||||| |||||| | |||||||||||||| || |||||||||||||| || ||||| | |||| ||||||| |
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| T |
5440877 |
tcaatgttgctttaactttgaatattccttcgtcaatgatggactaaggaaacatcaaaagttccaccaccaaggtcgaacacgggtgcatttttctcac |
5440976 |
T |
|
| Q |
215 |
cttctctccacattttcttg |
234 |
Q |
| |
|
|||||||| ||||||||||| |
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| T |
5440977 |
cttctctctacattttcttg |
5440996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 5433385 - 5433497
Alignment:
| Q |
20 |
tgatcttcaaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaa |
119 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||| ||||||||||||| ||| |
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| T |
5433385 |
tgatgttcaaatctttcttgtactttctatgaaacaattcaacaagacggttcaccaaattgttatcaaagtcaacaccacttaaatgagtatctctcaa |
5433484 |
T |
|
| Q |
120 |
tgtggccttaacc |
132 |
Q |
| |
|
|| ||| |||||| |
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|
| T |
5433485 |
tgaggctttaacc |
5433497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 5432586 - 5432671
Alignment:
| Q |
183 |
accaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcagtaggct |
268 |
Q |
| |
|
||||||||| |||||||| |||||| ||||||||||||||||||||||| | |||||| || ||||||| ||||| ||||||||| |
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| T |
5432586 |
accaagatcgaacacaagtacattcgtctcaccttctctccacattttcctatccaaagtattagcaataacagctacagtaggct |
5432671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 5432477 - 5432565
Alignment:
| Q |
25 |
ttcaaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatc |
113 |
Q |
| |
|
||||| || ||||||||| |||| | || ||||||||||||| |||||||||||||||||| |||| | | |||||||||||||||| |
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| T |
5432477 |
ttcaagtctttcttgtacattctctttaacaattcaacaagacagttcaccaaattgttatcaaaattgaaagcacccaaatgagtatc |
5432565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 407
Target Start/End: Original strand, 54396588 - 54396832
Alignment:
| Q |
163 |
gaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcag |
262 |
Q |
| |
|
||||||||||| |||||||| || | ||||| | |||||| |||| || |||| |||| | |||||| ||||||||||||||||| ||||| |||| |
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| T |
54396588 |
gaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcag |
54396687 |
T |
|
| Q |
263 |
taggctcgttgatgatcctcatcacattaaaaccggcaatttttcctgcatcttttgtagcttgtctctgtgagttgttgaagtaggcaggaacagtgat |
362 |
Q |
| |
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||||||| || || ||||||| |||||| ||||| | ||| || |||||||| |||||||| | || || | ||||| || ||||||||||| | |
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| T |
54396688 |
taggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaac |
54396787 |
T |
|
| Q |
363 |
aacagcattgttcacttcatgacccaaataagtttcagcaacttc |
407 |
Q |
| |
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||||||||| |||||| |||||| | | ||| |||||||||||| |
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| T |
54396788 |
aacagcattcttcactggatgaccaagaaaagcttcagcaacttc |
54396832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 371
Target Start/End: Original strand, 39985876 - 39986019
Alignment:
| Q |
228 |
tttcttgtccaaaccataagcaatagcagctgcagtaggctcgttgatgatcctcatcacattaaaaccggcaatttttcctgcatcttttgtagcttgt |
327 |
Q |
| |
|
||||||||| | |||||||||||| ||||| ||||| ||||| ||||| || | ||| ||||||| ||||||||| ||| ||||| || |||||||| |
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|
| T |
39985876 |
tttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagcttga |
39985975 |
T |
|
| Q |
328 |
ctctgtgagttgttgaagtaggcaggaacagtgataacagcatt |
371 |
Q |
| |
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| ||| |||| || ||||| ||||| ||||| | ||||||||| |
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|
| T |
39985976 |
cgctgggagtcattaaagtaagcagggacagtaacaacagcatt |
39986019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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