View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9719_low_41 (Length: 238)

Name: NF9719_low_41
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9719_low_41
NF9719_low_41
[»] chr5 (14 HSPs)
chr5 (119-223)||(1497224-1497328)
chr5 (110-223)||(35712185-35712298)
chr5 (116-209)||(22934825-22934918)
chr5 (125-223)||(16644726-16644824)
chr5 (116-213)||(29726370-29726468)
chr5 (151-189)||(38388817-38388855)
chr5 (116-213)||(11187430-11187527)
chr5 (116-196)||(13796423-13796503)
chr5 (116-223)||(16669326-16669436)
chr5 (7-42)||(1497613-1497648)
chr5 (116-187)||(34381856-34381927)
chr5 (116-196)||(29665490-29665570)
chr5 (168-212)||(38154852-38154896)
chr5 (116-196)||(39932986-39933066)
[»] chr8 (14 HSPs)
chr8 (110-196)||(3073400-3073486)
chr8 (110-219)||(3705490-3705599)
chr8 (125-212)||(10005478-10005568)
chr8 (152-196)||(10276462-10276506)
chr8 (117-177)||(11094264-11094324)
chr8 (136-187)||(11587793-11587844)
chr8 (136-187)||(35544027-35544078)
chr8 (152-207)||(38777434-38777489)
chr8 (136-187)||(41541014-41541065)
chr8 (151-213)||(10278205-10278267)
chr8 (116-174)||(38047332-38047390)
chr8 (116-165)||(3098954-3099003)
chr8 (116-177)||(37432197-37432258)
chr8 (116-196)||(16736458-16736538)
[»] scaffold0077 (1 HSPs)
scaffold0077 (122-215)||(54380-54472)
[»] chr1 (14 HSPs)
chr1 (116-223)||(35739769-35739875)
chr1 (125-219)||(44441208-44441302)
chr1 (155-214)||(14886033-14886093)
chr1 (110-162)||(32825632-32825684)
chr1 (136-187)||(4227942-4227993)
chr1 (152-187)||(22943704-22943739)
chr1 (151-196)||(33889844-33889890)
chr1 (151-196)||(33954360-33954406)
chr1 (122-187)||(9410915-9410980)
chr1 (116-189)||(24583960-24584033)
chr1 (116-189)||(24589674-24589747)
chr1 (116-213)||(49183986-49184083)
chr1 (153-197)||(29075046-29075089)
chr1 (132-188)||(37449732-37449788)
[»] chr3 (12 HSPs)
chr3 (122-189)||(12064782-12064849)
chr3 (116-197)||(21652786-21652867)
chr3 (110-213)||(25372032-25372135)
chr3 (125-196)||(40575322-40575392)
chr3 (116-187)||(38999620-38999691)
chr3 (116-179)||(45030051-45030114)
chr3 (116-187)||(52040284-52040355)
chr3 (122-212)||(40250245-40250334)
chr3 (122-187)||(23782369-23782434)
chr3 (116-169)||(29436849-29436902)
chr3 (154-187)||(32078233-32078266)
chr3 (142-187)||(39144441-39144486)
[»] chr2 (8 HSPs)
chr2 (122-196)||(26775295-26775370)
chr2 (123-189)||(30737883-30737949)
chr2 (116-213)||(27003261-27003357)
chr2 (116-196)||(3242670-3242750)
chr2 (141-221)||(17154561-17154641)
chr2 (116-191)||(31643801-31643876)
chr2 (144-213)||(41635468-41635537)
chr2 (19-110)||(39903963-39904049)
[»] chr6 (7 HSPs)
chr6 (116-213)||(34708171-34708268)
chr6 (116-208)||(21599349-21599440)
chr6 (137-212)||(25149323-25149397)
chr6 (151-189)||(33821111-33821149)
chr6 (136-187)||(30510789-30510840)
chr6 (116-183)||(32243331-32243398)
chr6 (122-187)||(17441988-17442053)
[»] chr4 (20 HSPs)
chr4 (125-174)||(2734612-2734661)
chr4 (116-223)||(35415889-35415997)
chr4 (125-213)||(48078100-48078188)
chr4 (135-196)||(1167506-1167567)
chr4 (135-196)||(1169988-1170049)
chr4 (110-223)||(52156966-52157073)
chr4 (134-213)||(1173213-1173292)
chr4 (138-212)||(19306272-19306346)
chr4 (122-187)||(32385394-32385459)
chr4 (122-187)||(33599818-33599883)
chr4 (136-196)||(47467620-47467680)
chr4 (116-187)||(37788051-37788122)
chr4 (122-196)||(9482582-9482656)
chr4 (110-196)||(24569432-24569518)
chr4 (116-198)||(50174536-50174618)
chr4 (122-187)||(10672837-10672902)
chr4 (122-187)||(10886477-10886542)
chr4 (152-181)||(17509970-17509999)
chr4 (139-187)||(7555256-7555304)
chr4 (122-174)||(43157360-43157412)
[»] chr7 (9 HSPs)
chr7 (116-196)||(46243921-46244001)
chr7 (141-212)||(14717995-14718066)
chr7 (116-196)||(27295010-27295090)
chr7 (116-187)||(8611989-8612060)
chr7 (116-219)||(9076702-9076804)
chr7 (136-187)||(46944523-46944574)
chr7 (116-190)||(34302605-34302679)
chr7 (133-174)||(30336145-30336186)
chr7 (146-179)||(40825772-40825805)
[»] scaffold0427 (1 HSPs)
scaffold0427 (116-187)||(5407-5478)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 1497328 - 1497224
Alignment:
Q  119 atcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaatatggag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1497328 atcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaatatggag 1497229  T
Q  219 ggagt 223  Q
    |||||    
T  1497228 ggagt 1497224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 35712185 - 35712298
Alignment:
Q  110 taaggtataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataa 209  Q
    ||||| ||||| |||| |||||||| ||||||||| ||||||||||||||||||||| |||| || |||| ||||||||| |||||| ||  ||||||||    
T  35712185 taagggataattttgtcaaatcattcataatttctatttccaatacaaaattaactacatttcttgatatatgtgaaaatgtcaaaacgacttataataa 35712284  T
Q  210 aatatggagggagt 223  Q
    |||| |||||||||    
T  35712285 aatacggagggagt 35712298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 22934825 - 22934918
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataa 209  Q
    ||||| ||||||||||| |||||  |||||||||||||||||| | || || |||||||||||||||||||||| ||||||  | |||||||||    
T  22934825 ataattttgtaaaatcacttatagattctctttccaatacaaagtaaattacattttttaatatgtgtgaaaatgtcaaaacaacctataataa 22934918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 16644726 - 16644824
Alignment:
Q  125 taaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaatatggagggagt 223  Q
    |||||||| | ||||||| ||||| || |||||| ||||||| ||||||||||||||| |||||  |||||||||  | |||||||||| |||||||||    
T  16644726 taaaatcactcataatttttcttttcagtacaaatttaactacattttttaatatgtgcgaaaaattcaaaatgacttgtaataaaatacggagggagt 16644824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 29726370 - 29726468
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaacta-tattttttaatatgtgtgaaaatatcaaaatgatctataataaaata 213  Q
    ||||| || |||||||||| ||||||||| ||| ||||| |||||||||||   ||||||||||| | ||||||||| |||| ||  ||||||||||||    
T  29726370 ataattttataaaatcattcataatttctattttcaataaaaaattaactaccgttttttaatatatatgaaaatataaaaacgacttataataaaata 29726468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 38388855 - 38388817
Alignment:
Q  151 aatacaaaattaactatattttttaatatgtgtgaaaat 189  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  38388855 aatataaaattaactatattttttaatatgtgtgaaaat 38388817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 11187430 - 11187527
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaata 213  Q
    ||||| |||||| |||| || |||||||||||| |||||| |||| || || |||| ||||||||| |  |||| |||||||||  ||||||||||||    
T  11187430 ataattttgtaagatcacttgtaatttctcttttcaatactaaataaaatacatttcttaatatgtatataaatgtcaaaatgacttataataaaata 11187527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 13796423 - 13796503
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaa 196  Q
    ||||| ||||||||||| |   ||||||| ||||||||||||||||||| ||||||  |||||||  ||||||| ||||||    
T  13796423 ataattttgtaaaatcaatctcaatttctatttccaatacaaaattaacgatatttcctaatatgcatgaaaatgtcaaaa 13796503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 223
Target Start/End: Original strand, 16669326 - 16669436
Alignment:
Q  116 ataatcttgtaaaatcatttataa---tttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaat 212  Q
    ||||||||||||||||| | ||||   ||| | ||| || || ||||||||||| |||| ||||||||| ||||||| |||||| ||  |||||| ||||    
T  16669326 ataatcttgtaaaatcactcataaatttttttattttcattataaaattaactacatttattaatatgtatgaaaatgtcaaaacgacttataatcaaat 16669425  T
Q  213 atggagggagt 223  Q
    | |||||||||    
T  16669426 acggagggagt 16669436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 1497648 - 1497613
Alignment:
Q  7 gccaaaattacttaatattaaataaaaaatctgtta 42  Q
    |||||||||||||||||||||||||||||| |||||    
T  1497648 gccaaaattacttaatattaaataaaaaatttgtta 1497613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 34381927 - 34381856
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||| ||||||||| | | ||||| ||||||||| | |||| ||||| ||||||| |||||||||||||||    
T  34381927 ataattttgtaaaataactcataatatctctttcccacacaatattaattatatttcttaatatgtgtgaaa 34381856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 29665490 - 29665570
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaa 196  Q
    ||||| ||||||||  | |||||||||||||| || | |||| ||||| || |||| |||||||||||||||  |||||||    
T  29665490 ataattttgtaaaacaacttataatttctcttccccacacaatattaattacatttcttaatatgtgtgaaatgatcaaaa 29665570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 38154896 - 38154852
Alignment:
Q  168 attttttaatatgtgtgaaaatatcaaaatgatctataataaaat 212  Q
    |||| ||||||| ||||||||||| |||||||| |||||||||||    
T  38154896 atttattaatatttgtgaaaatattaaaatgatgtataataaaat 38154852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 39932986 - 39933066
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaa 196  Q
    ||||| ||||||||| | | |||||||||||| || | |||| ||||| ||||||| |||||| ||||||||  |||||||    
T  39932986 ataattttgtaaaataactcataatttctcttccccacacaatattaattatatttcttaatacgtgtgaaatgatcaaaa 39933066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 3073486 - 3073400
Alignment:
Q  110 taaggtataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaa 196  Q
    ||||| ||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||    
T  3073486 taagggataattttgtgaaatcatttataatttctctttgcaatacaaaattaactatatttcataatatgtgtgaaaatatcaaaa 3073400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 3705490 - 3705599
Alignment:
Q  110 taaggtataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataa 209  Q
    ||||| ||||| |||||||||||||||| |||| |||||| |||||||||||||| |||||||||||||| ||| ||||| | |||  ||| ||| ||||    
T  3705490 taaggaataattttgtaaaatcatttatgatttttctttctaatacaaaattaacaatattttttaatatatgtaaaaatgttaaatcgatttattataa 3705589  T
Q  210 aatatggagg 219  Q
    |||| |||||    
T  3705590 aatacggagg 3705599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 10005568 - 10005478
Alignment:
Q  125 taaaatcatttataatttctctttccaatacaaaattaac---tatattttttaatatgtgtgaaaatatcaaaatgatctataataaaat 212  Q
    |||||||| | |||||||||||||| ||||||||||||     ||||||| ||||||||||||||||| ||||||| || | |||||||||    
T  10005568 taaaatcactcataatttctctttctaatacaaaattactagttatatttcttaatatgtgtgaaaatgtcaaaatcatatgtaataaaat 10005478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 10276506 - 10276462
Alignment:
Q  152 atacaaaattaactatattttttaatatgtgtgaaaatatcaaaa 196  Q
    |||||||||||| ||||||||||||||||| |||||||| |||||    
T  10276506 atacaaaattaattatattttttaatatgtatgaaaatagcaaaa 10276462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 11094264 - 11094324
Alignment:
Q  117 taatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaat 177  Q
    |||| ||||||||| | | ||||||||||||| |||||||||||||| || ||||||||||    
T  11094264 taattttgtaaaataactaataatttctcttttcaatacaaaattaattacattttttaat 11094324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 11587844 - 11587793
Alignment:
Q  136 ataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||| ||||||||| |||||| ||||| ||||||| |||||||||||||||    
T  11587844 ataatatctctttcccatacaatattaattatatttcttaatatgtgtgaaa 11587793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 35544078 - 35544027
Alignment:
Q  136 ataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||| ||||||||| |||||| ||||| ||||||| |||||||||||||||    
T  35544078 ataatatctctttcccatacaatattaattatatttcttaatatgtgtgaaa 35544027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 38777434 - 38777489
Alignment:
Q  152 atacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataat 207  Q
    ||||||||| || ||||||||||||||| |||||||  || |||||||||||||||    
T  38777434 atacaaaatcaattatattttttaatatatgtgaaatgataaaaatgatctataat 38777489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 41541065 - 41541014
Alignment:
Q  136 ataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||| ||||||||| |||||| ||||| ||||||| |||||||||||||||    
T  41541065 ataatatctctttcccatacaatattaattatatttcttaatatgtgtgaaa 41541014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 10278267 - 10278205
Alignment:
Q  151 aatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaata 213  Q
    ||||||||||||| || |||||||||||||| |||||||| ||||| ||  |||||| |||||    
T  10278267 aatacaaaattaattacattttttaatatgtatgaaaatagcaaaacgacttataattaaata 10278205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 38047390 - 38047332
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatatttttt 174  Q
    ||||| ||||||||||| | |||||||||| ||| |||| ||||||||||| |||||||    
T  38047390 ataattttgtaaaatcactcataatttctcattctaatataaaattaactacatttttt 38047332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 3098954 - 3099003
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaact 165  Q
    ||||| ||||||||||  | ||||||||| ||||||||||||||||||||    
T  3098954 ataattttgtaaaatccctcataatttctatttccaatacaaaattaact 3099003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 37432197 - 37432258
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaat 177  Q
    ||||| |||||||||   |||||||||||||||| |||||||||||||  | ||||||||||    
T  37432197 ataattttgtaaaattgcttataatttctctttctaatacaaaattaatcacattttttaat 37432258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 16736538 - 16736458
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaa 196  Q
    ||||| ||||||||  | |||||||||||||| || | |||| ||||| || ||||||||||| ||||||||  |||||||    
T  16736538 ataattttgtaaaacaacttataatttctcttccccacacaatattaattacattttttaatacgtgtgaaatgatcaaaa 16736458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 54380 - 54472
Alignment:
Q  122 ttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaatatg 215  Q
    ||||||| ||||| ||||| |||||||| |||||||||| || ||||||||| |||||||||||||||||||||| ||| ||||||||||||||    
T  54380 ttgtaaagtcattcataatatctctttctaatacaaaat-aattatatttttaaatatgtgtgaaaatatcaaaaggatttataataaaatatg 54472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 35739875 - 35739769
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaac-tatattttttaatatgtgtgaaaatatcaaaatgatctataataaaatat 214  Q
    ||||| ||||||||||| | ||||||||||||||||||||||||||||| || |||| |||  |||||||||||| |||||||||  ||||||||||||     
T  35739875 ataattttgtaaaatcaatcataatttctctttccaatacaaaattaacttacatttatta--atgtgtgaaaatgtcaaaatgacgtataataaaatac 35739778  T
Q  215 ggagggagt 223  Q
    |||||||||    
T  35739777 ggagggagt 35739769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 44441302 - 44441208
Alignment:
Q  125 taaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaatatggagg 219  Q
    ||||||||  |||||||| |||||| |||| || ||||| ||||||||||||||| ||| |||||||||||| |   ||||||||||||| ||||    
T  44441302 taaaatcacatataatttatctttctaatataatattaattatattttttaatatatgtaaaaatatcaaaacgtcttataataaaatatagagg 44441208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 14886033 - 14886093
Alignment:
Q  155 caaaattaactatatttt-ttaatatgtgtgaaaatatcaaaatgatctataataaaatat 214  Q
    |||||||||||||||||| ||||||| ||||||||||||||||  || |||||||| ||||    
T  14886033 caaaattaactatatttttttaatatatgtgaaaatatcaaaacaatttataataatatat 14886093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 32825632 - 32825684
Alignment:
Q  110 taaggtataatcttgtaaaatcatttataatttctctttccaatacaaaatta 162  Q
    ||||| ||||| || |||||||||| ||||||| |||||||||||||||||||    
T  32825632 taagggataattttataaaatcattcataatttttctttccaatacaaaatta 32825684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 4227942 - 4227993
Alignment:
Q  136 ataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||| ||||||||| |||||| ||||| || ||||||||||||||||||||    
T  4227942 ataatatctctttcccatacaatattaattacattttttaatatgtgtgaaa 4227993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 22943739 - 22943704
Alignment:
Q  152 atacaaaattaactatattttttaatatgtgtgaaa 187  Q
    |||||||||||| |||||||||||||||||||||||    
T  22943739 atacaaaattaattatattttttaatatgtgtgaaa 22943704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 33889890 - 33889844
Alignment:
Q  151 aatacaaaattaactatatttttt-aatatgtgtgaaaatatcaaaa 196  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||||||    
T  33889890 aatacataattaacaatatttttttaatatgtgtgaaaatatcaaaa 33889844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 33954360 - 33954406
Alignment:
Q  151 aatacaaaattaactatatttt-ttaatatgtgtgaaaatatcaaaa 196  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||||||    
T  33954360 aatacataattaacaatatttttttaatatgtgtgaaaatatcaaaa 33954406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 9410980 - 9410915
Alignment:
Q  122 ttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||||||| | ||||||| | ||||||| | |||| ||||| | |||||||||||||||||||||    
T  9410980 ttgtaaaataacttataatatatctttcccaaacaatattaattttattttttaatatgtgtgaaa 9410915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 24583960 - 24584033
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaat 189  Q
    ||||| ||||||||| | | ||||| ||||||||| | |||| ||||| || |||| |||||||||||||||||    
T  24583960 ataattttgtaaaataactcataatatctctttcccacacaatattaattacatttcttaatatgtgtgaaaat 24584033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 24589674 - 24589747
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaat 189  Q
    ||||| ||||||||| | | ||||| ||||||||| | |||| ||||| || |||| |||||||||||||||||    
T  24589674 ataattttgtaaaataactcataatatctctttcccacacaatattaattacatttcttaatatgtgtgaaaat 24589747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 49183986 - 49184083
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaata 213  Q
    ||||| |||||||  ||||| | ||||| ||||  ||||||||| ||||||||||| ||||||||| || |||| ||||||  |  ||||||||||||    
T  49183986 ataattttgtaaagacatttgtgatttcgcttttgaatacaaaactaactatatttcttaatatgtatgcaaatgtcaaaacaacttataataaaata 49184083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 29075046 - 29075089
Alignment:
Q  153 tacaaaattaactatattttttaatatgtgtgaaaatatcaaaat 197  Q
    |||||||||||||||| |||| ||||| |||||||||||||||||    
T  29075046 tacaaaattaactata-ttttgaatatttgtgaaaatatcaaaat 29075089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 37449732 - 37449788
Alignment:
Q  132 atttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaa 188  Q
    |||||||||||||| |  |||||||||| |||  |||||||||||||| ||||||||    
T  37449732 atttataatttctcctgtcaatacaaaagtaataatattttttaatatatgtgaaaa 37449788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 12064849 - 12064782
Alignment:
Q  122 ttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaat 189  Q
    ||||||||||| | ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  12064849 ttgtaaaatcactcataatttatcttttcaatacaaaattaactacattttttaatatgtgtgaaaat 12064782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 21652867 - 21652786
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaat 197  Q
    ||||| ||||||||||||| ||||||||||||| ||| ||||||||||||| ||||||||| |||||| | ||| |||||||    
T  21652867 ataattttgtaaaatcattcataatttctcttttcaaaacaaaattaactacattttttaacatgtgtaataatgtcaaaat 21652786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 25372032 - 25372135
Alignment:
Q  110 taaggtataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataa 209  Q
    ||||| ||||| || ||||||| || | || |||||||||||||||||||||||||||||||||||||| |||| |||| || |||| ||  || |||||    
T  25372032 taagggataattttataaaatctttcagaaattctctttccaatacaaaattaactatattttttaatacgtgtcaaaaaatgaaaaggacttacaataa 25372131  T
Q  210 aata 213  Q
    ||||    
T  25372132 aata 25372135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 40575322 - 40575392
Alignment:
Q  125 taaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaa 196  Q
    |||||| | ||||||||| |||||  ||||||||||||||||||| ||||||||||||||||||||||||||    
T  40575322 taaaattacttataattt-tctttggaatacaaaattaactatatattttaatatgtgtgaaaatatcaaaa 40575392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 38999620 - 38999691
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||| ||||||||  | ||||||| ||||||||| |||||| ||||| || |||| |||||||||||||||    
T  38999620 ataattttgtaaaacaacttataatatctctttcccatacaatattaattacatttcttaatatgtgtgaaa 38999691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 45030114 - 45030051
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatat 179  Q
    ||||||||||||||||| ||  ||||||||||| ||| | ||||||||||| |||| |||||||    
T  45030114 ataatcttgtaaaatcacttgcaatttctcttttcaaaataaaattaactaaatttcttaatat 45030051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 52040355 - 52040284
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||| ||||||||| | | ||||| ||||||||| | |||| ||||| || ||||||||||||||||||||    
T  52040355 ataattttgtaaaataactcataatatctctttcccacacaatattaattacattttttaatatgtgtgaaa 52040284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 40250334 - 40250245
Alignment:
Q  122 ttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaat 212  Q
    ||||||||||| | ||| ||||| |||| |||||||||||||||| |||| ||| ||||||| ||||| ||| |||||   ||||||||||    
T  40250334 ttgtaaaatcactcatagtttctttttc-aatacaaaattaactacatttcttagtatgtgtaaaaatgtcataatgactaataataaaat 40250245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 23782369 - 23782434
Alignment:
Q  122 ttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||||||  ||| ||||| ||||||||||| |||| ||||| || |||| |||||||||||||||    
T  23782369 ttgtaaaacaattcataatatctctttccaacacaatattaattacatttcttaatatgtgtgaaa 23782434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 29436849 - 29436902
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatat 169  Q
    ||||| ||||||||||| | ||| ||| ||||| ||||||||||||||||||||    
T  29436849 ataattttgtaaaatcactcatagtttttctttgcaatacaaaattaactatat 29436902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 32078233 - 32078266
Alignment:
Q  154 acaaaattaactatattttttaatatgtgtgaaa 187  Q
    |||||||||| |||||||||||||||||||||||    
T  32078233 acaaaattaattatattttttaatatgtgtgaaa 32078266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 39144486 - 39144441
Alignment:
Q  142 tctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||||||  |||||||||||| |||||||||||||| ||||||||    
T  39144486 tctctttctcatacaaaattaattatattttttaatacgtgtgaaa 39144441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 26775295 - 26775370
Alignment:
Q  122 ttgtaaaatcatttataatttctctttccaatacaaaa-ttaactatattttttaatatgtgtgaaaatatcaaaa 196  Q
    ||||||||||| | ||||||| |||||||||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  26775295 ttgtaaaatcactcataatttatctttccaatacaaaaattaactacatttcttaatatgtgtgaaaatatcaaaa 26775370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 30737883 - 30737949
Alignment:
Q  123 tgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaat 189  Q
    |||||||||| ||||||||| | ||||||||| ||||||||||| |||| |||||||||||||||||    
T  30737883 tgtaaaatcacttataatttttatttccaatataaaattaactacatttcttaatatgtgtgaaaat 30737949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 27003261 - 27003357
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaata 213  Q
    ||||| || |||||| ||||||| ||| ||||| |||||||||||||| || ||||||| |||||||||||||||| ||||  |  ||||||||||||    
T  27003261 ataattttataaaattatttatactttatcttttcaatacaaaattaattacatttttt-atatgtgtgaaaatataaaaacaacttataataaaata 27003357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 3242670 - 3242750
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaa 196  Q
    ||||| |||||||||||||  ||||||||||||| |||| ||||||||||  |||| ||| |||||||| |||| ||||||    
T  3242670 ataattttgtaaaatcattcgtaatttctctttctaatataaaattaactgcatttcttattatgtgtggaaatgtcaaaa 3242750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 17154561 - 17154641
Alignment:
Q  141 ttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaatatggaggga 221  Q
    |||| |||||||||||||||||| ||||||||||| ||||||| | ||| |||| | ||  ||||||||||||| ||||||    
T  17154561 ttctttttccaatacaaaattaattatattttttagtatgtgtcataatgtcaagacgacttataataaaatatagaggga 17154641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 31643876 - 31643801
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatat 191  Q
    ||||| || ||||| |||| | ||||||| ||||||||||||| ||||| |||||| ||||||| |||||||||||    
T  31643876 ataattttataaaagcattcacaatttctttttccaatacaaagttaacaatatttcttaatatatgtgaaaatat 31643801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 41635537 - 41635468
Alignment:
Q  144 tctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaata 213  Q
    |||||| |||||||||||||||| |||||||||||  | | |||||||||||| ||  ||||||||||||    
T  41635537 tctttctaatacaaaattaactacattttttaataaatataaaaatatcaaaacgaattataataaaata 41635468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 39903963 - 39904049
Alignment:
Q  19 taatattaaataaaaaatctgttagagcttatttattcctcccgttgtttttcattgtttttcttttcatccgtaccaaatagcaacgctct 110  Q
    |||||||||||||||||||||| | ||||| ||| ||| ||||||  |||||| ||||     |||| | ||||||||||||||||||||||    
T  39903963 taatattaaataaaaaatctgtaacagcttgtttcttcttcccgtcatttttcgttgt-----ttttaacccgtaccaaatagcaacgctct 39904049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 34708171 - 34708268
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaata 213  Q
    ||||| || |||||||||||||||||| ||||| |||||||||||||| || |||| || |||||||||||||||| ||||  |  ||||||||||||    
T  34708171 ataattttataaaatcatttataatttatcttttcaatacaaaattaattacatttctttatatgtgtgaaaatataaaaacaacttataataaaata 34708268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 21599440 - 21599349
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataata 208  Q
    ||||| |||||| |||||| | |||||||||||| |||||||||||||||| | |||||||||  ||| |||||||||||| ||| |||||||    
T  21599440 ataattttgtaatatcattcacaatttctctttc-aatacaaaattaactacaatttttaatacatgttaaaatatcaaaacgatttataata 21599349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 25149397 - 25149323
Alignment:
Q  137 taatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaat 212  Q
    |||||||||||||||||| ||||| ||||| ||| || |||||||||||||||  ||||||||  |||||||||||    
T  25149397 taatttctctttccaatataaaataaactacattctt-aatatgtgtgaaaatgacaaaatgacttataataaaat 25149323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 33821111 - 33821149
Alignment:
Q  151 aatacaaaattaactatattttttaatatgtgtgaaaat 189  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  33821111 aatataaaattaactatattttttaatatgtgtgaaaat 33821149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 30510840 - 30510789
Alignment:
Q  136 ataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||| ||||||||| |||||||||||| || |||| |||||||||||||||    
T  30510840 ataatatctctttcccatacaaaattaattacatttcttaatatgtgtgaaa 30510789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 32243331 - 32243398
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgt 183  Q
    ||||| ||||||||| |||||||||||||||||   |||||| ||||| || |||||||||| |||||    
T  32243331 ataattttgtaaaattatttataatttctctttttcatacaacattaattacattttttaatttgtgt 32243398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 17441988 - 17442053
Alignment:
Q  122 ttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||||||  ||| ||||| ||||||||| | |||| ||||| ||||||| |||||||||||||||    
T  17441988 ttgtaaaacaattcataatatctctttcccacacaatattaattatatttcttaatatgtgtgaaa 17442053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 2734661 - 2734612
Alignment:
Q  125 taaaatcatttataatttctctttccaatacaaaattaactatatttttt 174  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  2734661 taaaatcatttataatttttctttcccatacaaaattaactatatttttt 2734612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 35415997 - 35415889
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatat-tttttaatatgtgtgaaaatatcaaaatgatctataataaaatat 214  Q
    ||||| || |||||| ||| || |||| ||||||  ||||||||||||||| || |||||||||||||||||| |  ||||||||  |||||||||||||    
T  35415997 ataattttataaaataattcatgatttgtctttctcatacaaaattaactacatatttttaatatgtgtgaaagtcacaaaatgacatataataaaatat 35415898  T
Q  215 ggagggagt 223  Q
    ||| |||||    
T  35415897 ggaaggagt 35415889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 48078100 - 48078188
Alignment:
Q  125 taaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaata 213  Q
    |||||| | |||| |||| |||||  ||||||||||||||||||||||||||||||| | ||||||  |||||||  ||||||||||||    
T  48078100 taaaattacttattatttatctttttaatacaaaattaactatattttttaatatgtataaaaatagtaaaatgaaatataataaaata 48078188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 1167567 - 1167506
Alignment:
Q  135 tataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaa 196  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||| | | ||||||||||||    
T  1167567 tataatctctctttccaatataaaattaactacattttttaatatttataaaaatatcaaaa 1167506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 1170049 - 1169988
Alignment:
Q  135 tataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaa 196  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||| | | ||||||||||||    
T  1170049 tataatctctctttccaatataaaattaactacattttttaatatttataaaaatatcaaaa 1169988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 52157073 - 52156966
Alignment:
Q  110 taaggtataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataa 209  Q
    ||||| ||||| ||||||||||| | |||||||||||||||||||||||||     | |||| |||  |||||||||||| |||||| ||  ||||||||    
T  52157073 taagggataattttgtaaaatcactcataatttctctttccaatacaaaat----gacatttctta--atgtgtgaaaatgtcaaaacgacttataataa 52156980  T
Q  210 aatatggagggagt 223  Q
    |||| |||||||||    
T  52156979 aatacggagggagt 52156966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 1173292 - 1173213
Alignment:
Q  134 ttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaata 213  Q
    ||||||||||  ||||||||| |||||||| || |||||||||||| | | ||||||||||||  || ||||||||||||    
T  1173292 ttataatttcgttttccaatataaaattaagtacattttttaatatatataaaaatatcaaaacaatttataataaaata 1173213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 19306346 - 19306272
Alignment:
Q  138 aatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaat 212  Q
    ||||||||||| ||||||||||| || || | ||||||||||||||  ||||||||||| ||  |||||||||||    
T  19306346 aatttctcttttcaatacaaaatcaattacactttttaatatgtgttgaaatatcaaaacgacttataataaaat 19306272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 32385459 - 32385394
Alignment:
Q  122 ttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||||||| ||| ||||| ||| ||||| | |||||||||| ||||||| |||||||||||||||    
T  32385459 ttgtaaaataattcataatatctatttcccacacaaaattaattatatttcttaatatgtgtgaaa 32385394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 33599883 - 33599818
Alignment:
Q  122 ttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||||||| | ||||||| ||| ||||||| |||| ||||| || ||||||||||||||||||||    
T  33599883 ttgtaaaataacttataatatctttttccaacacaatattaattacattttttaatatgtgtgaaa 33599818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 47467620 - 47467680
Alignment:
Q  136 ataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaa 196  Q
    ||||||||| ||| ||||||||||||||||| |||| || |||| ||||||||| ||||||    
T  47467620 ataatttcttttttcaatacaaaattaactacatttcttgatatttgtgaaaatgtcaaaa 47467680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 37788051 - 37788122
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||| ||||||||| | | ||||||||||||||| | |||| ||||| ||||||| |||||| ||||||||    
T  37788051 ataattttgtaaaataactcataatttctctttcccacacaatattaattatatttcttaatacgtgtgaaa 37788122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 9482656 - 9482582
Alignment:
Q  122 ttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaa 196  Q
    |||||||||||   ||||||||||||| |||||||||||||| || |||| | |||||| ||| |||| ||||||    
T  9482656 ttgtaaaatcacacataatttctcttttcaatacaaaattaaatacatttctaaatatgcgtggaaatgtcaaaa 9482582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 24569432 - 24569518
Alignment:
Q  110 taaggtataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaa 196  Q
    ||||| ||||| ||||||||||| | ||||| ||||||| |||| |||||||||||| |||  |||||||   ||||||| ||||||    
T  24569432 taagggataattttgtaaaatcactcataatgtctcttttcaattcaaaattaactacattccttaatataaatgaaaatgtcaaaa 24569518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 50174536 - 50174618
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatg 198  Q
    ||||| ||||||||| | ||||||||||||||||| || ||| ||||| || | || ||||| |||||||||  |||||||||    
T  50174536 ataattttgtaaaatgacttataatttctctttcccatgcaacattaattacacttcttaatttgtgtgaaatgatcaaaatg 50174618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 10672837 - 10672902
Alignment:
Q  122 ttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||||||| ||| ||||| | ||||| | |||||||||||| |||| ||||||||| ||||||||    
T  10672837 ttgtaaaataattcataatatttcttttccatacaaaattaattataatttttaatacgtgtgaaa 10672902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 10886477 - 10886542
Alignment:
Q  122 ttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||||||| ||| ||||| | ||||| | |||||||||||| |||| ||||||||| ||||||||    
T  10886477 ttgtaaaataattcataatatttcttttccatacaaaattaattataatttttaatacgtgtgaaa 10886542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 181
Target Start/End: Complemental strand, 17509999 - 17509970
Alignment:
Q  152 atacaaaattaactatattttttaatatgt 181  Q
    ||||||||||||||||||||||||||||||    
T  17509999 atacaaaattaactatattttttaatatgt 17509970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 7555256 - 7555304
Alignment:
Q  139 atttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    |||||||||| | |||||||||||| ||||||| ||||| |||||||||    
T  7555256 atttctcttttccatacaaaattaattatatttcttaatttgtgtgaaa 7555304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 43157360 - 43157412
Alignment:
Q  122 ttgtaaaatcatttataatttctctttccaatacaaaattaactatatttttt 174  Q
    |||||||||||||  |||||  ||||| ||||||||||||||| |||||||||    
T  43157360 ttgtaaaatcattcttaattcatcttttcaatacaaaattaacaatatttttt 43157412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 46243921 - 46244001
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaa 196  Q
    ||||||||||||||| | | ||||||||| ||| |||||||||||||  || |||| ||||||||| ||||||| ||||||    
T  46243921 ataatcttgtaaaattactcataatttcttttttcaatacaaaattatttacatttcttaatatgtatgaaaatgtcaaaa 46244001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 14717995 - 14718066
Alignment:
Q  141 ttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaat 212  Q
    |||| ||| ||||||||||||||||| |||| |||| |||||| |||||||||||| ||  |||||||||||    
T  14717995 ttctttttacaatacaaaattaactacatttcttaagatgtgtaaaaatatcaaaacgacttataataaaat 14718066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 27295090 - 27295010
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaa 196  Q
    ||||| || |||||| | |||||||||   |||| | ||||||||||||||||| ||||||||| ||||||||| ||||||    
T  27295090 ataattttataaaattacttataatttggttttctattacaaaattaactatatcttttaatatatgtgaaaatgtcaaaa 27295010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 8611989 - 8612060
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||| ||||||||  | ||||||| ||||||||| | |||| ||||| || ||||||||||||||||||||    
T  8611989 ataattttgtaaaacaacttataatatctctttcccacacaatattaattacattttttaatatgtgtgaaa 8612060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 9076702 - 9076804
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaatatcaaaatgatctataataaaatatg 215  Q
    ||||| || |||||||||| | ||||| | |||| |||||||| ||| | | |||||| ||||||||| ||||||||||||| |  |||||||||||| |    
T  9076702 ataattttataaaatcattcacaatttttttttcgaatacaaatttacc-acatttttaaatatgtgtaaaaatatcaaaataacttataataaaatacg 9076800  T
Q  216 gagg 219  Q
    ||||    
T  9076801 gagg 9076804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 46944574 - 46944523
Alignment:
Q  136 ataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||| ||||||||| | |||| ||||| |||||||||||||||||||||||    
T  46944574 ataatatctctttcccacacaatattaattatattttttaatatgtgtgaaa 46944523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 34302605 - 34302679
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaaata 190  Q
    ||||| |||||||| || | ||||||| ||||  ||||||||||||||||| |||| ||||| || |||||||||    
T  34302605 ataattttgtaaaaccactcataatttttcttcacaatacaaaattaactaaatttcttaatttgcgtgaaaata 34302679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 30336186 - 30336145
Alignment:
Q  133 tttataatttctctttccaatacaaaattaactatatttttt 174  Q
    ||||| |||||| ||||||||| |||||||||||||||||||    
T  30336186 tttattatttctttttccaatataaaattaactatatttttt 30336145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 40825805 - 40825772
Alignment:
Q  146 tttccaatacaaaattaactatattttttaatat 179  Q
    |||| |||||||||||||||||||||||||||||    
T  40825805 tttcaaatacaaaattaactatattttttaatat 40825772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 5407 - 5478
Alignment:
Q  116 ataatcttgtaaaatcatttataatttctctttccaatacaaaattaactatattttttaatatgtgtgaaa 187  Q
    ||||| ||||||||  | ||||||| ||||||||| | |||| ||||| ||||||| |||||||||||||||    
T  5407 ataattttgtaaaacaacttataatatctctttcccacacaatattaattatatttcttaatatgtgtgaaa 5478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University