View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_low_43 (Length: 237)
Name: NF9719_low_43
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 78 - 229
Target Start/End: Complemental strand, 37310359 - 37310208
Alignment:
| Q |
78 |
atagaacttgttcaaaactaaaatcaaagtacactctattaaacaaattcatgtagtttcgtacctcgcctctaagttctgcataatagacagctccaaa |
177 |
Q |
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| T |
37310359 |
atagaacttgttcaaaactaaaatcaaagtacactctattaaacaaattcatgtagtttcgtacctcgcctctaagttctgcataatagacagctccaaa |
37310260 |
T |
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| Q |
178 |
tccaccttgaccaattttattatccaagctgaaattatttgtcgcctttgct |
229 |
Q |
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| T |
37310259 |
tccaccttgaccaattttattatccaagctgaaattatttgtcgcctttgct |
37310208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 78 - 225
Target Start/End: Complemental strand, 37238465 - 37238318
Alignment:
| Q |
78 |
atagaacttgttcaaaactaaaatcaaagtacactctattaaacaaattcatgtagtttcgtacctcgcctctaagttctgcataatagacagctccaaa |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37238465 |
atagaacttgttcaaaactaaaatcaaagtacactctattaaacaaattcatgtagtttcgtacctcgcctctaagttctgcataatagacagctccaaa |
37238366 |
T |
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| Q |
178 |
tccaccttgaccaattttattatccaagctgaaattatttgtcgcctt |
225 |
Q |
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| T |
37238365 |
tccaccttgaccaattttattatccaagctgaaattatttgtcgcctt |
37238318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 37202722 - 37202649
Alignment:
| Q |
146 |
cctctaagttctgcataatagacagctccaaatccaccttgaccaattttattatccaagctgaaattatttgt |
219 |
Q |
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| T |
37202722 |
cctctcagctctgcatagaagacttctccaaaaccaccttcaccaattttattagccatgctgaaattatttgt |
37202649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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