View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_low_46 (Length: 232)
Name: NF9719_low_46
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 14222661 - 14222719
Alignment:
| Q |
159 |
gaacctagtgacagagataaaggaagggaacaaggtctgatgagaagtaacggatcttt |
217 |
Q |
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| T |
14222661 |
gaacctagtgacagagataaaggaagggaacaaggtctgatgagaagtaacggatcttt |
14222719 |
T |
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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 14222397 - 14222444
Alignment:
| Q |
77 |
aatacaacaataaaagagattcctaagaaaattactgcagaatcaatt |
124 |
Q |
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| T |
14222397 |
aatacaacaataaaagagattcctaagaaaattactgcagaatcaatt |
14222444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 14232509 - 14232561
Alignment:
| Q |
165 |
agtgacagagataaaggaagggaacaaggtctgatgagaagtaacggatcttt |
217 |
Q |
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| T |
14232509 |
agtgacagagataaagcaaggaaacaaggtctgatgacaagtaacggatcttt |
14232561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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