View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_low_48 (Length: 223)
Name: NF9719_low_48
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_low_48 |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 17595387 - 17595195
Alignment:
| Q |
18 |
tacataatatatacacacaatctatagtagtatacatgcaccgaaaacacatgtgaaggtgaagataacaccataaagtgacgtgtagcatttctgctcc |
117 |
Q |
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| T |
17595387 |
tacataatatatacacacaatctatagtagtatacatgcaccaaaaacacatgtgaaggtgaagataacaccataaagtgacgtgtagcatttatgctcc |
17595288 |
T |
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| Q |
118 |
gataggaacgtatgataatcaaaccaagcaagtgctatgaattaattgaagaaatatagaacctggatggttttctttaatatgcacctatgc |
210 |
Q |
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| T |
17595287 |
gagaggaacgtatgataatcaaaccaagcaagtgctatgaattaattgaagaaatatagaacctggatggttttctttaatatgcacctatgc |
17595195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 53 - 203
Target Start/End: Original strand, 26902796 - 26902946
Alignment:
| Q |
53 |
atgcaccgaaaacacatgtgaaggtgaagataacaccataaagtgacgtgtagcatttctgctccgataggaacgtatgataatcaaaccaagcaagtgc |
152 |
Q |
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| T |
26902796 |
atgcaccgaaaacatatgtgaaagtggagataacatcataaagtgacgtgtagcatttatgctccgagaggaacgtatgataatcaaattaagcgagttc |
26902895 |
T |
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| Q |
153 |
tatgaattaattgaagaaatatagaacctggatggttttctttaatatgca |
203 |
Q |
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| T |
26902896 |
tatgtattaattgaggaaatatagaatctggatggttttctttaatatgca |
26902946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 10775654 - 10775698
Alignment:
| Q |
24 |
atatatacacacaatctatagtagtatacatgcaccgaaaacaca |
68 |
Q |
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| T |
10775654 |
atatatacacacaatctatagtagtatacatgcaccgaaaacaca |
10775698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 16873 - 17065
Alignment:
| Q |
18 |
tacataatatatacacacaatctatagtagtatacatgcaccgaaaacacatgtgaaggtgaagataacaccataaagtgacgtgtagcatttctgctcc |
117 |
Q |
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| T |
16873 |
tacataatatatatacacaatctttagtagtatatatgcaccgaaaaaacatgtgagggtgaagataacaccataaagtgacatgtagcgtttatgctcc |
16972 |
T |
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| Q |
118 |
gataggaacgtatgataatcaaaccaagcaagtgctatgaattaattgaagaaatatagaacctggatggttttctttaatatgcacctatgc |
210 |
Q |
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| T |
16973 |
gagaggaacgtatgatagtcaaacccagcaagtgctatgaattaattgaggaaatatagaacctggatggttttctttaatatgcacatatgc |
17065 |
T |
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Target: chr6 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 4281015 - 4281207
Alignment:
| Q |
18 |
tacataatatatacacacaatctatagtagtatacatgcaccgaaaacacatgtgaaggtgaagataacaccataaagtgacgtgtagcatttctgctcc |
117 |
Q |
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||||||||||||| ||||||| |||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||| | | |||||| |
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| T |
4281015 |
tacataatatatatacacaatttatagtagtatatatgcaccgaaaaaacatgtgagggtgaagataacaccataaagtgacgtgtagtgtctatgctcc |
4281114 |
T |
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| Q |
118 |
gataggaacgtatgataatcaaaccaagcaagtgctatgaattaattgaagaaatatagaacctggatggttttctttaatatgcacctatgc |
210 |
Q |
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| T |
4281115 |
gagaggaacgtatgataaccaaaccaagcaagtgctatgaattaattgaggaaatatagaacctggatggttttctttaatatgcacatatgc |
4281207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 56 - 203
Target Start/End: Complemental strand, 12326317 - 12326170
Alignment:
| Q |
56 |
caccgaaaacacatgtgaaggtgaagataacaccataaagtgacgtgtagcatttctgctccgataggaacgtatgataatcaaaccaagcaagtgctat |
155 |
Q |
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| T |
12326317 |
caccgaaaacatatgtgaaagtggagataacatcataaagtgacgtgtagcatttatgctccgagaggaacatatgataatcaaaccaagcgagtgctat |
12326218 |
T |
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| Q |
156 |
gaattaattgaagaaatatagaacctggatggttttctttaatatgca |
203 |
Q |
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| T |
12326217 |
gaattaattgaggaaatatagaacctggatggttttctttaatatgca |
12326170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 20678422 - 20678493
Alignment:
| Q |
80 |
agataacaccataaagtgacgtgtagcatttctgctccgataggaacgtatgataatcaaaccaagcaagtg |
151 |
Q |
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| T |
20678422 |
agatatcatcataaagtgatgtgtagcattcatgctttgattggaacgtgtgataatcaaaccaggcaagtg |
20678493 |
T |
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