View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_low_50 (Length: 207)
Name: NF9719_low_50
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 44879746 - 44879919
Alignment:
| Q |
19 |
agaatgatgatgaaaatgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttg |
118 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44879746 |
agaatcatgatgaaaatgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttg |
44879845 |
T |
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| Q |
119 |
tgatgttcggctcatccttaggtaagaatataaccatttcactctctgttctttgcattttctcaccctctctg |
192 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44879846 |
tgatgttcggctcatccttaggtaagaatttaaccatttcactctctgttctttgcattttctcaccctgtctg |
44879919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 44861956 - 44862119
Alignment:
| Q |
19 |
agaatgatgatgaaaatgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttg |
118 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| | |||||| || |||||||| | |
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| T |
44861956 |
agaatcatgatgaaaatgcatggtcttggtgacgggccatattggttgatttcatatggatattttcttgccttatctgtgatctacatattgtgtttcg |
44862055 |
T |
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| Q |
119 |
tgatgttcggctcatccttaggtaagaatataaccatttcactctctgttctttgcattttctc |
182 |
Q |
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| T |
44862056 |
tgatattcggctcagtcttaggtaagaatataactatttcattctctgttcttggcattttctc |
44862119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 44836325 - 44836483
Alignment:
| Q |
19 |
agaatgatgatgaaaatgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttg |
118 |
Q |
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| T |
44836325 |
agaatcatgatgaaaatgcatggtcttggtgatgggccatattggatgattacatatggttattttcttgccttatcagcgatatacatgttgtgttttg |
44836424 |
T |
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| Q |
119 |
tgatgttcggctcatccttaggtaagaatataaccatttcactctctgttctttgcatt |
177 |
Q |
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|||| ||||||||| ||| |||||||||| || |||| ||||||| ||||| ||||| |
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| T |
44836425 |
tgatattcggctcagtcttgggtaagaataaaattatttgactctctattcttggcatt |
44836483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 44897270 - 44897407
Alignment:
| Q |
19 |
agaatgatgatgaaaatgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttg |
118 |
Q |
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||||| |||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| ||||| ||||||| |||||| |||||||| |||| |
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| T |
44897270 |
agaatcatgatgaaaatgcatggtcttggtgatggaccatattggatgattacatatggttatttccttgccttatcagtgatctacatgttgtgctttg |
44897369 |
T |
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| Q |
119 |
tgatgttcggctcatccttaggtaagaatataaccatt |
156 |
Q |
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|||| || |||||| | |||||||||||||||||||| |
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| T |
44897370 |
tgatatttggctcagtcctaggtaagaatataaccatt |
44897407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 44848296 - 44848439
Alignment:
| Q |
19 |
agaatgatgatgaaaatgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttttg |
118 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| || ||||||||||| ||||| | |||||| || || ||||||| |
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| T |
44848296 |
agaatcatgatgaaaatgcatggtcttggtgacgggccatattggatgatttcatacggctattttcttgccttatcggtgatctacattttatgttttg |
44848395 |
T |
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| Q |
119 |
tgatgttcggctcatccttaggtaagaatataaccatttcactc |
162 |
Q |
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||| ||| |||||| ||| ||||||||||||||||||| |||| |
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| T |
44848396 |
tgacgtttggctcagtctttggtaagaatataaccatttaactc |
44848439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 12927546 - 12927449
Alignment:
| Q |
19 |
agaatgatgatgaaaatgcatggtcttggtgacgggccatattggttgattacatatggttattttcttgcattatcagcgatctatatgttgtgttt |
116 |
Q |
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||||| |||||||||||||||||||| ||||| |||||||||||| | ||| | || ||||||||||||| ||||| ||||| ||||||||||| |
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| T |
12927546 |
agaatcatgatgaaaatgcatggtctcggtgatgggccatattggattatttcttacagttattttcttgccatatcaattatctacatgttgtgttt |
12927449 |
T |
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