View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_low_51 (Length: 202)
Name: NF9719_low_51
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 7e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 49546725 - 49546551
Alignment:
| Q |
17 |
catttatagcactttattccaatatatttttcaccccatactcattatattaggattctttattttccctgttttccaactcagcatacttctcattcag |
116 |
Q |
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| T |
49546725 |
catttatagcactttattccaatatatttt-caccccatactcattatattaggattctttattttccctgttttccaactcagcatacttctcattcag |
49546627 |
T |
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| Q |
117 |
tccatcttcttccatttatccatctcctgtgacccttgctatatctttctagaataaacatgagttgtggtcctat |
192 |
Q |
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| T |
49546626 |
tccatcttcttccatttatctatctcctgtgacccttgctatatctttctagaataaacatgagttgtggtcctat |
49546551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 49443753 - 49443632
Alignment:
| Q |
66 |
ttaggattctttattttccctgttttccaactcagcatacttctcattcagtccatcttctt---ccatttatccatctcctgtgacccttgctatatct |
162 |
Q |
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| T |
49443753 |
ttaggattctttattttcccttttttccaactcaacatacttttcattcagcctatcctctttttccatttatctatctcatgtgccccttgctatctct |
49443654 |
T |
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| Q |
163 |
ttctagaataaacatgagttgt |
184 |
Q |
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| T |
49443653 |
ttctagaataaacatgagttgt |
49443632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 47988551 - 47988507
Alignment:
| Q |
148 |
acccttgctatatctttctagaataaacatgagttgtggtcctat |
192 |
Q |
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| T |
47988551 |
acccttgctatctctttctaggataaacatgagttgtgatcctat |
47988507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 192
Target Start/End: Original strand, 47872680 - 47872709
Alignment:
| Q |
163 |
ttctagaataaacatgagttgtggtcctat |
192 |
Q |
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| T |
47872680 |
ttctagaataaacatgagttgtggtcctat |
47872709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 69 - 192
Target Start/End: Original strand, 14961990 - 14962116
Alignment:
| Q |
69 |
ggattctttattttccctgttttccaactcagcatacttctcattcagtccatcttc---ttccatttatccatctcctgtgacccttgctatatctttc |
165 |
Q |
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||||||||||||| |||| |||||| ||||||||||||||||||||| ||||| || | ||| ||||| |||| ||||| || ||||||| |||||| |
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| T |
14961990 |
ggattctttatttcccctattttcctactcagcatacttctcattcaacccatcctctcatgccacttatctatcttctgtgtcctttgctatctctttc |
14962089 |
T |
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| Q |
166 |
tagaataaacatgagttgtggtcctat |
192 |
Q |
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| T |
14962090 |
tggaataaacttgacctgtggtcctat |
14962116 |
T |
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