View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9719_low_6 (Length: 467)
Name: NF9719_low_6
Description: NF9719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9719_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 212 - 451
Target Start/End: Original strand, 3100569 - 3100808
Alignment:
| Q |
212 |
caactatcaatatgatattttgaagttgctaaactagtgggagttcaagtggagctatgttttttccataggctaaaactctatggttgatgtattggat |
311 |
Q |
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| T |
3100569 |
caactatcaatatgatattttgaagttgctaaactagtgggagttcaagtggagctatgttttttccataggctaaaactctatggttgatgtattggat |
3100668 |
T |
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| Q |
312 |
cactcaagcacatagccatcaagaactttcgaacaatgttttaaaaactgaatcaaaccgttcattcagttaaatcgagaattgacattgtctacggttt |
411 |
Q |
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| T |
3100669 |
cactcaagcacatagccatcaagaactttcgaacaatgttttaaaaactgaatcaaaccgttcattcagttaaatcgagaattgacattgtctacgattt |
3100768 |
T |
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| Q |
412 |
agttatttgaatggtttgatcgcaattttgtataagtttg |
451 |
Q |
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| T |
3100769 |
agttatttgaatggtttgatcgcaattttgtataagtttg |
3100808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 3100369 - 3100514
Alignment:
| Q |
11 |
gttggagcgttcgatggttttgtggttgtgattggatcaagtggctatggtgaagtgcatatgggttatgtttttgatgtaaataataataattggagaa |
110 |
Q |
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| T |
3100369 |
gttggagcgttcgatggttttgtggttgtgattggatcaagtggctatggtgaagtgcatatgggttatgtttttgatgtaaataataataattggagaa |
3100468 |
T |
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| Q |
111 |
aattggattgtccagatgggtttaagggacatgtccaaactggttg |
156 |
Q |
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| T |
3100469 |
aattggattgtccagatgggtttaagggacatgtccaaactggttg |
3100514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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