View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9720_8 (Length: 325)
Name: NF9720_8
Description: NF9720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9720_8 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 34 - 315
Target Start/End: Original strand, 592668 - 592952
Alignment:
| Q |
34 |
aaatgtatcaccaccatctactataaagttattactacctccattcatgttcaattgtcgtctaaggttatcacccccaactaccatgtt---aattttg |
130 |
Q |
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| T |
592668 |
aaatgtatcaccaccatctactataaagttattactacctccattcattttcaattgtcgtctaaggttatcacccccaactaccatgttgttaattttg |
592767 |
T |
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| Q |
131 |
atggaattgtttctgttgatgcnnnnnnnnnnnnnnatatatattaaaaggtaagggaaaaaatttaccttttgatattgttaatactactttaaatttg |
230 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592768 |
atggaattgtttcttttgatgtttttttttttttatatatatattaaaaggtaagggaaaaaatttaccttttgatattgttaatactactttaaatttg |
592867 |
T |
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| Q |
231 |
aaaatgacaaattaatataaacacaaaatttctagaaaaacaacacagggaacagatggagtaacatttattctcttaatattct |
315 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
592868 |
aaaatgacaaattaatagaaacacaaaatttctagaaaaacaacacagggaacagatggagtaacatttattctcttaattttct |
592952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 34 - 315
Target Start/End: Complemental strand, 579760 - 579469
Alignment:
| Q |
34 |
aaatgtatcaccaccatctactataaagttattactacctccattcatgttcaattgtcgtctaaggttatcacccccaactaccatgtt---aattttg |
130 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||| | ||||| |||||||||||| |||| ||||||||||||||||||||||| ||||||| |
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| T |
579760 |
aaatgtatcaccactatctactataaagttattattacctgctttcattttcaattgtcgtttaagtttatcacccccaactaccatgttgttaattttg |
579661 |
T |
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| Q |
131 |
atggaattgtttctgttgatgcnnnnnnnnnnnnnnatatatatta---aaaggtaagggaaaaaatttaccttttgatatt----gttaatactacttt |
223 |
Q |
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| T |
579660 |
atagaattgtttcttttgatgttttttttttgtaaattttattttatcaaaaggcaagggaaaaaagtttccttttaatgttaatagttaatactacttt |
579561 |
T |
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| Q |
224 |
aaatttgaaaatgacaaattaatataaacacaaaatttctagaaaaacaacacagggaacagatggagtaacatttattctcttaatattct |
315 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
579560 |
aaatttgaaaatgacaaattaatagaaacacaaaatttctagaaaaacaacacagggaacagatggagtaacatttattctcttaattttct |
579469 |
T |
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